Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000785735.2_202015-10- 23] 1,922 sequences; 36,590,891 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq213 147 3e-30 seq134 120 4e-22 >seq213 Length=42570 Score = 147 bits (162), Expect = 3e-30 Identities = 453/692 (65%), Gaps = 9/692 (1%) Strand=Plus/Plus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGG 75187 || |||| ||| | | ||| ||||| | || || || |||| | | ||||| || Sbjct 1237 CGAGACTTTGAATACGATTATTTTGGCTTTAAGACACTGGAGAGGGGATATCTCTTCCGT 1296 Query 75188 CTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATC 75247 || | |||| | ||||| || ||| | ||| ||||||| || || | |||||| Sbjct 1297 GTCCACGGCAAAGTGGTGGAACGTCCCCAGCAGATGATCATGCGCGTGGCTCTAGGCATC 1356 Query 75248 CACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTC 75307 ||| | |||| | | | | ||||| ||||| ||||| ||| | ||| Sbjct 1357 CACAAGACGAACATCAAGGCGGCACTTGAGACTTACGAACTCATGTCGCAAAAATTCTTC 1416 Query 75308 ATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGC 75367 | ||||| || || || || |||||||||||||| ||| | || || |||| ||| Sbjct 1417 ACCCACGCCACCCCCACGCTGTTCAATGCTGGTACCCCACGTCCACAATTGTCTTCGTGC 1476 Query 75368 TTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGT 75427 ||| | | |||| |||| ||||| || | || || |||| ||||| | ||||| Sbjct 1477 TTCTTGTTGGCCATGCAGGATGACTCTATTGAAGGCATTTATGACACTCTGAAACAGTGT 1536 Query 75428 GCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAAT 75487 ||| ||||| |||||||| || || ||||| || || || | | |||| | | Sbjct 1537 GCGTGCATCTCCAAGTGGGCAGGAGGCATTGGCATCAGTATGCACAACATCCGAGCTACT 1596 Query 75488 AA-ATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGT 75546 || | || || || || || || || || | || || || || ||||| || || Sbjct 1597 AACAGCT-ACATCCGCGGCACGAACGGCTCGTCCAACGGCATCATCCCCATGCTGCGAGT 1655 Query 75547 ATTTAACGCCACAGCGCGCTATGTAAATCAAGCGGGGCGT---CGCAAGGGGTCCATCGC 75603 ||||||| || || || || || | || | || || |||||||| || | || Sbjct 1656 GTTTAACGATACGGCACGTTACGTGGACCAGGGTGGAGGTAAACGCAAGGGATCATTTGC 1715 Query 75604 GGTCTACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCA 75663 | | || ||||||| ||||| || ||| | | |||||| | || | || ||||| Sbjct 1716 GATTTATCTGGAACCGTGGCACGCTGATGTGTTTGAGTTCTTGGATCTGCGCAAGAACCA 1775 Query 75664 AGGTGACGAAGAGGCTCGGTGTA-GAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTT 75722 ||| ||| || || | ||| | | || | || | | |||||| | || || || | Sbjct 1776 TGGTAACG-AGCTGCACCGTGCACGTGACTTGTTCTATGCTCTGTGGGTGCCGGATCTAT 1834 Query 75723 TCATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAG 75782 |||||||||| || |||| ||| | ||| | | |||||||| || |||| || | Sbjct 1835 TCATGAAGCGTGTGGAGGCCAATGGCAAGTGGAGTTTGTTCTGTCCCAACGAGGCTCCCG 1894 Query 75783 GTCTCTCCGA-CGCGGTGGGTGAGGAGTTTGA 75813 |||| | ||| || | ||| |||||||| || Sbjct 1895 GTCTGTACGAGTGCTG-GGGAGAGGAGTTCGA 1925 >seq134 Length=62988 Score = 120 bits (132), Expect = 4e-22 Identities = 330/500 (66%), Gaps = 12/500 (2%) Strand=Plus/Minus Query 65023 AAGAAGGCGAAATGGGCAATGAAATGGTTTGACAC-AAAGTCTCGCTCCTTCGCCGAGCG 65081 |||||||||| ||||| | | ||||| ||| | ||||| || ||| | | | ||||| Sbjct 14437 AAGAAGGCGAGTTGGGCGCTAAGATGGTGCGACCCGAAAGTGTC-CTCATACCCGGAGCG 14379 Query 65082 CCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTA 65141 ||| | || ||||| ||||||||| ||||||||||| || || || ||| | || | Sbjct 14378 TCTTCTGGCATTTGCAGCTGTGGAGGGAATCTTCTTCTCGGGCTCCTTTTGCTCCATCTT 14319 Query 65142 TTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCG 65201 ||| | |||||||| ||||||||||| || || ||||||| || || || ||| || Sbjct 14318 CTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGAGCTTCTCCAACGAGCTCATTAGTCG 14259 Query 65202 AGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGACTTTGCGTAATAGACC 65261 ||||| ||| | ||| || ||||| | | | | || || || |||| Sbjct 14258 TGATGAAGGTATGCACACAGACTTTGCTTGTCTGTTGTACTCGAAGCTG-GT----GACC 14204 Query 65262 CA-CTACCGAAAC----TATCCACGCCATCGTGAAAGAGGCGGTTGAGATTGAGAAAGGG 65316 | || ||| | | | | |||| || | || || || |||| || | | | Sbjct 14203 AAGCTGCCGGAGCAGCGTGTGCACGAGATTATCCGTGACGCTGTGAAGATCGAACACGAG 14144 Query 65317 TTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAGAAGATGTCCGAG 65376 || | ||| | |||||| | || ||||| |||||||| | | |||| | || Sbjct 14143 TTTGTGAGCGACTCGCTCCCAGTGGAGCTGATCGGCATGAACTCGGCGCTCATGTGCCAG 14084 Query 65377 TACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGGGTGCCACCCATTTGGAAC 65436 |||||||||| ||| | || || || || | |||| ||| | || | ||| Sbjct 14083 TACATTGAGTTCGTGGCAGACCGCCTGCTGTATTCGCTTGGTGTGTCCAAGATCTACAAC 14024 Query 65437 GCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTTCTTT 65496 | ||||| || ||||||| ||||| | || || | || ||||| |||||||| Sbjct 14023 GTCAAGAACCCGTTTGACTGGATGGACATGATCTCTCTACAGGGCAAGACTAACTTCTTC 13964 Query 65497 GAGAAGCGAGTTGGGGACTA 65516 |||||||| || || || || Sbjct 13963 GAGAAGCGTGTGGGCGAGTA 13944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596555267415360