Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000785735.2_202015-10- 23] 1,922 sequences; 36,590,891 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq213 105 6e-18 seq241 91.5 1e-13 >seq213 Length=42570 Score = 105 bits (116), Expect = 6e-18 Identities = 393/609 (65%), Gaps = 9/609 (1%) Strand=Plus/Minus Query 139389 GCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATC 139448 ||| || |||| || ||| ||||||| |||||||| | ||||| ||| | | ||| || Sbjct 1860 GCCATTGGCCTCCACACGCTTCATGAATAGATCCGGCACCCACAGAGCATAGAACAAGTC 1801 Query 139449 GCGCGCCTTCTT-ATCTTCCGAACCCATGTTACGTTT-CATGTTAAGGAAATCAAAAACG 139506 || || | | || || ||||| | | | || | | ||| ||||| || Sbjct 1800 ACGTGCACGGTGCAGCT--CGTTACCATGGTTCTTGCGCAGATCCAAGAACTCAAACACA 1743 Query 139507 TCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGTTT---GCCACCTTGA 139563 ||||||||||| ||||||||||| || || | || || || ||||| ||||| || Sbjct 1742 TCAGCGTGCCACGGTTCCAGATAAATCGCAAATGATCCCTTGCGTTTACCTCCACCCTGG 1683 Query 139564 TCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTT 139623 || |||| ||| | | || || || || |||| ||| || | ||| | | | Sbjct 1682 TCCACGTAACGTGCCGTATCGTTAAACACTCGCAGCATGGGGATGATGCCGTTGGACGAG 1623 Query 139624 CCGTTGGTGCTACGGATGGGACTGTTGCGAGCTCGGACGTCATGTACATTGATGCCGATT 139683 ||||| |||| |||||| ||||| |||||||| || || | | ||||||| || Sbjct 1622 CCGTTCGTGCCGCGGATGTAGCTGTTAGTAGCTCGGATGTTGTGCATACTGATGCCAATG 1563 Query 139684 CCGCCGCCAAATTTGGATATTAAAACGCAATCGCGTAATGTCTCGTATATACCTCTTATG 139743 || || | | ||||| || | | || | | || || || || ||| || Sbjct 1562 CCTCCTGCCCACTTGGAGATGCACGCACACTGTTTCAGAGTGTCATAAATGCCTTCAATA 1503 Query 139744 CTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGGCT 139803 ||| |||||||| | | || ||||| || || | ||| || || || || || Sbjct 1502 GAGTCATCCTGCATGGCCAACAAGAAGCACGAAGACAATTGTGGACGTGGGGTACCAGCA 1443 Query 139804 GCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGTTTCGACATCAATTCGTACGTTTCG 139863 ||||| || || | ||||| ||||| | || || |||||| | |||||| || || Sbjct 1442 TTGAACAGCGTGGGGGTGGCGTGGGTGAAGAATTTTTGCGACATGAGTTCGTAAGTCTCA 1383 Query 139864 A-TGGCGCTCACAATATCCCTTCCGTGGATACCGACAGAGACTCGCATCAGCATATGTTG 139922 | || ||| | || | | | |||||| || | || || ||||| | ||| || || Sbjct 1382 AGTGCCGC-CTTGATGTTCGTCTTGTGGATGCCTAGAGCCACGCGCATGATCATCTGCTG 1324 Query 139923 GATCCGTTCGGCCACCGCGCCCTCGAtttttttCAGATAACCGTTCTCTAGGGTCTTGTA 139982 | ||||| |||| ||| | || ||||| || |||| || ||||| | Sbjct 1323 GGGACGTTCCACCACTTTGCCGTGGACACGGAAGAGATATCCCCTCTCCAGTGTCTTAAA 1264 Query 139983 GCCAAAGTA 139991 |||||| || Sbjct 1263 GCCAAAATA 1255 >seq241 Length=42966 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || |||||||| || || | | Sbjct 761 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTCGACGTGGAGCCGTCG 820 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||| | || | || || || || ||||| ||||| || ||||| || || || || Sbjct 821 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGAATTCCGCCTGACCAG 880 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA 24858 || ||| ||||||| ||||| || ||||| ||||| Sbjct 881 CAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGA 915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449886791210160