Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000785735.2_202015-10- 23] 1,922 sequences; 36,590,891 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq134 194 3e-43 seq31 147 3e-29 seq131 134 2e-25 seq213 87.8 3e-11 >seq134 Length=62988 Score = 194 bits (214), Expect = 3e-43 Identities = 242/328 (74%), Gaps = 8/328 (2%) Strand=Plus/Plus Query 793893 ACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGC 793952 ||||| ||||||| ||||||||||| ||| |||||| ||||| |||||||||| || Sbjct 13929 ACGCCTGCCTTGGAGTACTCGCCCACACGCTTCTCGAAGAAGTTAGTCTTGCCCTGTAGA 13988 Query 793953 GAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCAC---CCG 794009 ||||||| |||||||| |||||||| | | | || || ||| | || || Sbjct 13989 GAGATCATGTCCATCCAGTCAAACGGGTT---CTTGACGTTGTAGATCTTGGACACACCA 14045 Query 794010 AGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTC 794069 ||||| ||||||||||| || ||||| |||||||||||||||||||| || | |||| Sbjct 14046 AGCGAATACAGCAGGCGGTCTGCCACGAACTCAATGTACTGGCACATGAGCGCCGAGTTC 14105 Query 794070 ATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCC 794129 |||||||| ||| |||| || ||||| ||||| |||||||| | ||||||| || || Sbjct 14106 ATGCCGATCAGCTCCACTGGGAGCGAGTCGCTCACAAACTCGTGTTCGATCTTCACAGCG 14165 Query 794130 TCGATGATGATCTGCCTGGGCACG-TCGGACGACGGCTTGTCGACGAGCATCGTGTAGAG 794188 || ||| |||| | || |||| | || | ||||| || ||| ||| ||| | Sbjct 14166 TCACGGATAATCT-CGTGCACACGCTGCTCCGGCAGCTTGGTCACCAGCTTCGAGTACAA 14224 Query 794189 CAGGCAGGCAAAGTCGCAATGCAGACCT 794216 ||| || |||||||| |||| |||| Sbjct 14225 CAGACAAGCAAAGTCTGTGTGCATACCT 14252 Score = 179 bits (198), Expect = 6e-39 Identities = 240/331 (73%), Gaps = 11/331 (3%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 |||||| || ||||| || | |||||| |||| || || |||||||| || ||||| Sbjct 14249 ACCTTCATCACGACTAATGAGCTCGTTGGAGAAGCTCAGACCAGGCATGAGACCACGCTT 14308 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||||||||| ||||||| || || ||||||||| ||||| ||||| || || ||||| Sbjct 14309 CTTGAGCCAGAAGATGGAGCAAAAGGAGCCCGAGAAGAAGATTCCCTCCACAGCTGCAAA 14368 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTT---GTTGATCCACTTCATCGC 794516 | | || ||||| | | | | || |||| || | ||| | | ||| Sbjct 14369 TGCCAGAAGACGCTCCGGGTATGAGGACA------CTTTCGGGTCGCACCATCTTAGCGC 14422 Query 794517 CCA-CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCT 794575 ||| ||| ||||| || |||| | || | || || || || || | |||||||||| Sbjct 14423 CCAACTC-GCCTTCTTGGTCACACACGGGATGGTCTCAATTGCACGCAGCAGGTGGTCCT 14481 Query 794576 TCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGT 794635 |||| || | |||||||| ||| ||||| ||||| |||||||| |||||||||||||| Sbjct 14482 TCTCCACAGCGTCCTTGATGTACGTGTCAATGAGCAGCGAGTACACCTCTGAGTGGATGT 14541 Query 794636 TTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 | || ||||| || |||||||| || ||||| Sbjct 14542 TCTCAATGGCAATTTGGAAGCCGTAGAAGCA 14572 Score = 131 bits (144), Expect = 3e-24 Identities = 163/220 (74%), Gaps = 10/220 (5%) Strand=Plus/Plus Query 796186 GCCAGGTTCTCAGCCACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATA 796245 ||||||||||| ||||||||| || |||||||| || ||||| | |||||||||||| Sbjct 14613 GCCAGGTTCTCGTTCACGATGCCATCACTGGCGGCAAAGAAGGCCAAGACGTGCTTGATG 14672 Query 796246 AAGTGACGCTCGTCGTCGCTGAGCGAGACCCAGTGGACCGT---GTCGGCGCCGAGGTCG 796302 ||||||||||||| ||| |||| |||||| || | |||| | | ||| Sbjct 14673 AAGTGACGCTCGTTGTCTGTGAGGTTTCCCCAGT---CCTTGAGGTCGTGTACCAAGTCC 14729 Query 796303 ACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGT--T 796360 | ||| || || ||||| ||| |||||| ||||| |||||||||| ||| | ||| | Sbjct 14730 AGCTCTTCCGCAGTCCAGAAGCTGGCCTCCGCCTTCTTGTACATCTGCCACA--CGTCGT 14787 Query 796361 GGTAGCGGATGGGGAACAGAACAAAGCGATTGGGGTTCTC 796400 | | |||||||||| || || ||||| || ||||| || Sbjct 14788 GCTCCTGGATGGGGAATAGCACGAAGCGGTTCGGGTTTTC 14827 >seq31 Length=136124 Score = 147 bits (162), Expect = 3e-29 Identities = 188/259 (73%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||| || ||||| || ||||| || ||||||||| |||| || || || ||| Sbjct 108502 TGAACTTGGTCACAGCCTTCGTGCCCTCCGACACGGCGTGCTTGGCAAGCTCACCAGGCA 108561 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || ||||| || ||||||||||||||| || | ||| |||||| | Sbjct 108562 GCATGAGACGCACAGCCGTCTGGATCTCGCGGCTGGACAGCGTCGACTTCTTGTTGTAAC 108621 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||| ||| ||||||||| | ||||||| |||| |||||||||| |||||||||| Sbjct 108622 GCGACAGCTTGCCGGCCTCCGACGCGATGCGCTCGAAGATGTCGTTGATGAACGAGTTCA 108681 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||||||||| ||| ||| ||| || ||||||||||| |||||||||| Sbjct 108682 TGATCGACATGCCCCGCTTGCTGATACCCGTCTCAGGGTGCACCTGACGCAGCACCTTGT 108741 Query 1485710 AAACAAAGGACGAGTACGA 1485728 | | ||| |||||||| Sbjct 108742 AGATGTAGGTGGAGTACGA 108760 >seq131 Length=66906 Score = 134 bits (148), Expect = 2e-25 Identities = 185/259 (71%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||| || ||||| || || || || ||||||||| ||||||| || || | | Sbjct 1791 TGAACTTGGTCACAGCCTTCGTGCCTTCAGACACGGCGTGCTTGGCCAGCTCACCCGGGA 1850 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || ||||| || ||||||||||| ||| || | ||| |||||| | Sbjct 1851 GCATGAGACGCACAGCAGTCTGGATCTCACGGCTGGACAGCGTCGACTTCTTGTTGTAAC 1910 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||| ||| |||||||| | | ||||| |||| |||||||||| |||||||||| Sbjct 1911 GCGACAGCTTACCGGCCTCCGACGCAATGCGCTCGAAGATGTCGTTGATGAACGAGTTCA 1970 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||||||||| ||| ||| ||| |||||||||||||| |||||||||| Sbjct 1971 TGATCGACATACCGCGCTTGCTGATACCCGTCTCGGGGTGCACCTGGCGCAGCACCTTGT 2030 Query 1485710 AAACAAAGGACGAGTACGA 1485728 | | ||| |||||||| Sbjct 2031 AGATGTAGGTAGAGTACGA 2049 >seq213 Length=42570 Score = 87.8 bits (96), Expect = 3e-11 Identities = 349/538 (65%), Gaps = 20/538 (4%) Strand=Plus/Minus Query 2069253 GTCGACGGTAAACTGGATGGCGTTGGCGGCAGGCCGGGTGCGCAGATAGTACATGCCGGT 2069312 ||| ||||| ||||||||||||| || || || ||||| ||||||||||| || Sbjct 3081 GTCCACGGTGAACTGGATGGCGTCAGCTTTCGGGCGTCCGCGCATGTAGTACATGCCCGT 3022 Query 2069313 CTTGAGGCCGCGACGCCACGCGTAGGCGTGCATCGACGTGATGGACTCGGCATT---CGG 2069369 |||||| || ||||||||| ||||||||| || | || | || ||| Sbjct 3021 CTTGAGCCCCTTCTTCCACGCGTAAAAGTGCATCGATGTAAG---CTTGCTTTTTGTCGG 2965 Query 2069370 GACGGCACAGTAGAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGGTCGGCCGC 2069429 |||| || | ||| |||||||| ||||| || |||| | || || || | Sbjct 2964 TTCGGCGATGTGAATGTTCAGCGACTGACTCTGACAGATGTAGGCACCACGATCCGCAGA 2905 Query 2069430 CATGTCGATGGTC-ACG-CGGTTGGACACCTCCCACACGGTCTTGAACAGGGCCTTGAGA 2069487 || ||| | || || | | | || ||||||||| |||||| || |||||| Sbjct 2904 CAGGTCCAGAATCGACTTCTGCTTGAT--CTCCCACACCGTCTTGTACTTCTCCTTGATG 2847 Query 2069488 TGCGGCGGCACCTCGTCGTCATCAAAGCCCTGCACCGAGCC-CTGCGCTGCGATGAGGCG 2069546 || ||| | | | ||| | | |||||||| || | | | | | || | Sbjct 2846 TGGTCCGGAA-----TGGAGCTCACATTC-TGCACCGAACCGCCGTCATTCAA-GATCTG 2794 Query 2069547 GTCGCGAAAGTCGGGCGTCCACAGGCCGCGCGCCATCATGCGC-TCGACCAGGTGGCGGT 2069605 || || | || || | ||||| || || | |||| || | | | ||||| || Sbjct 2793 GTTACGCACCTCAGGAGCCCACACACCCAGCTCAATCA-GCTCATTCATCAGGTACTTGT 2735 Query 2069606 TGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTGATGACCT 2069665 | || | |||||| || |||| ||||||||||| |||| ||||| |||| | Sbjct 2734 TCACGATGGTAAACTCTCCCGCAAGCACGCGGCGGTTGTACATGTTAGAGGTGAACGGTT 2675 Query 2069666 CGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGA 2069725 || | |||| | || || |||||||| | ||| | ||||| ||||| |||| || | Sbjct 2674 CGATAGACTCGTTATTACCGAGGATCTGTGCCGTAGACGCCGTCGGCATCGGCGCGACCA 2615 Query 2069726 GCAGCGAGTTGCGCAGGCCGTACTGTCGCACCAGCGCCCGCAGGGCGTCCCAGTCCCA 2069783 | ||||| ||||||||||||| || |||| | || || || |||||||||| Sbjct 2614 GGAGCGAATTGCGCAGGCCGTTCTTGACCACCTTCTCCTTAAGCGCAGCCCAGTCCCA 2557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916041948093758