Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000785735.2_202015-10- 23] 1,922 sequences; 36,590,891 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq241 132 3e-26 seq202 100 2e-16 >seq241 Length=42966 Score = 132 bits (146), Expect = 3e-26 Identities = 149/197 (76%), Gaps = 8/197 (4%) Strand=Plus/Minus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 ||||||| ||||| |||||||| || |||| | || || || ||||| |||||||||| Sbjct 950 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 891 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 |||| || |||||||| |||| | ||||||||||| | ||||| || ||||| || Sbjct 890 TCAGACGCTGCTGGTCAGGCGGAATTCCCTCCTTGTCCTGGATTTTCTGCTTGAC--AT- 834 Query 34908 CTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | || || || | ||| || || | || |||||||| ||||| |||||||| Sbjct 833 -TGTCAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTC 775 Query 34964 ACAAAGATCTGCATGAT 34980 ||||||||||||||||| Sbjct 774 ACAAAGATCTGCATGAT 758 >seq202 Length=44642 Score = 100 bits (110), Expect = 2e-16 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | |||||||||||||| ||||| |||||||| || |||| | || Sbjct 8688 CAGCACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGACAGAGTGCGGCCGTC 8747 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGG 34869 ||||| ||||| || ||||||||||| || |||||||| |||| Sbjct 8748 CTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGG 8792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325685170849718