Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000785735.2_202015-10- 23] 1,922 sequences; 36,590,891 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq213 280 1e-70 seq241 125 7e-24 seq134 125 7e-24 >seq213 Length=42570 Score = 280 bits (310), Expect = 1e-70 Identities = 1189/1848 (64%), Gaps = 60/1848 (3%) Strand=Plus/Minus Query 147953 GCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAGTCGTGCACCGACGA 148012 ||||| |||||||||||||||||||| ||| | ||| ||||| ||||| ||| | Sbjct 3042 GCGCATGTAGTACATGCCCGTCTTGAGCCCCTTCTTCCACGCGTAAAAGTGCATCGATG- 2984 Query 148013 CATGAGCGTG---TACGTCGGGTGCGGC-ACAAACAGATTAAACGACTGGCTCTGGTCAA 148068 | ||| || | ||||| | |||| | | || | |||||| ||||| | Sbjct 2983 --TAAGCTTGCTTTTTGTCGGTT-CGGCGATGTGAATGTTCAGCGACTGACTCTGACAGA 2927 Query 148069 TGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTAT-CTTCATCTCCCAGGCC 148127 || | || ||||| || || | || || | || ||| || | ||| |||||||| || Sbjct 2926 TGTAGGCACCACGATCCGCAGACAGGTCCA-GAATCGACTTCTGCTTGATCTCCCACACC 2868 Query 148128 GTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGCTGCACCGAGCCGCGG 148187 ||||||||| | |||||| || || |||||| | | ||||||||| |||| | Sbjct 2867 GTCTTGTACTTCTCCTTGATGTGGTCCGGAATGGAGCTCACATTCTGCACCGAACCGCCG 2808 Query 148188 TGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCTCGATCAGGTCATCG 148247 | || ||||| || |||| || | | | ||||| ||||| |||| Sbjct 2807 TCATTCAAGATCTGGTTACGCACCTCAGGAGCCCACACACCCAGCTCAATCAGCTCATTC 2748 Query 148248 ATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTG 148307 ||||| |||| ||||| | |||||| || || |||||||| || |||| ||| Sbjct 2747 ATCAGGTACTTGTTCACGATGGTAAACTCTCCCGCAAGCACGCGGCGGTTGTACATGTTA 2688 Query 148308 CTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGC 148367 || |||||||| | |||||||| || || | ||||| || || | ||||| ||| Sbjct 2687 GAGGTGAACGGTTCGATAGACTCGTTATTACCGAGGATCTGTGCCGTAGACGCCGTCGGC 2628 Query 148368 ATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCC 148427 || ||| ||||| ||||| ||||||| ||| || | || ||| || || Sbjct 2627 ATCGGCGCGACCAGGAGCGAATTGCGCAGGCCGTTCTTGACCACCTTCTCCTTAAGCGCA 2568 Query 148428 GCCCAGTCCCAGAG--CGGCG-ACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCG 148484 ||||||||||| || ||| | | || || ||||||||||| ||| |||| | || || Sbjct 2567 GCCCAGTCCCACAGACCGGAGGAAGGCGTGACGTTCCACATATCGAACTGGAAGATACCC 2508 Query 148485 CGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAG 148544 ||| || || |||| | | | |||||| || ||| |||||||| Sbjct 2507 TTGCTGGCAGGCGAACCCTGGAAAGTCTCGTACGGGCCCAATTCCGTGGCCAGTTCCATT 2448 Query 148545 CTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCA---GCGCC 148601 || ||| | | ||||||| || |||||| || | | |||||||| ||||| Sbjct 2447 GACGTCTCCATAGAAGCGTAGTAGATGGTCTCGAAGATATTCTTGTTGAGCTCACGCGCC 2388 Query 148602 GCCG-ACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTAC 148660 ||| |||| ||| ||| | || | | || ||||| ||||||||||| || Sbjct 2387 TCCGGACTC----TCGAACGCAAAGTCCATGAGGATGAAAGCGTCCGCAAGGCCCTGCAC 2332 Query 148661 GCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGC-GGATAGT 148719 || | |||| || ||||| |||||||| ||| || ||| | | || |||| Sbjct 2331 ACCAATACCAACAGGACGGTGACGCATGTTGGAATTGCGAGC-CTCAATAACGGGGTAGT 2273 Query 148720 GGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTT-----TGTAATTCTGC- 148773 |||| |||||||| ||||| || ||||| | |||||| | || | || Sbjct 2272 AGTTGACGTCGATGACCTTGTTCAGGTTGCGTGTGATCACCTTGACGACATCATACAGCT 2213 Query 148774 -GCAGCAATTCAAAATCGTACTTGTCATCTACGATGCATCGGTTCACGGCGATAGAGGCT 148832 | | || || | || || ||| |||| | | || | || | || || Sbjct 2212 TCTTGTAGTTGAATA-CGGCGTTCTCA---ACGA-ACTTGGG--GAGCGCCACGGACGCC 2160 Query 148833 AGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTG 148892 | |||||||||||| |||||| || | | ||||| | | || ||||| ||| Sbjct 2159 AAGTTGCACACGGCCACCTCATCAGGCGACGTATACTCCATCACTTCACAGCACAAGTTG 2100 Query 148893 CTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTAC 148952 || | ||| ||| | ||||| ||||| ||||| |||| ||||||||||| Sbjct 2099 CTCGAGCGAATCGTGCCGAGGTTCTGCTGATTAGACTTGCGGTTGGCGGCGTCCTTGTAT 2040 Query 148953 AGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTAT---GAACCGATGCAGGTCC 149009 | |||| | || |||| || || | ||||| |||| || ||||| ||| | Sbjct 2039 AACATGAAAGGCACGCCCGTCTCAATCTGCGCGTCCAGAATAGCGAACC---ACAGCTGT 1983 Query 149010 TGCGCGCGCACTTGCTGCTCGTAGCGACCCTCCTGCTCGTATAAAGTATACAGCCGCTCG 149069 || || | | || | ||| || || ||||||| | ||||| |||| Sbjct 1982 TGAGCATTGATTGTCTTGCGGGCGCGGCCTTCACGCTCGTACTTCTCAAACAGCGTCTCG 1923 Query 149070 AACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACCAC 149129 ||| |||| || |||| |||| |||||||| || || || || | | |||| Sbjct 1922 AACTCCTCTCCCCAGCACTCGTACAGACCGGGAGCCTCGTTGGGACAGAACAAACTCCAC 1863 Query 149130 ACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAGG 149189 ||| | || | ||| |||||||| || ||||| |||||||| || || || | | | Sbjct 1862 TTGCCATTGGCCTCCACACGCTTCATGAATAGATCCGGCACCCACAGAGCATAGAACAAG 1803 Query 149190 T--CGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGT-TGAGCACGCTGAAT 149246 | || || | ||||| ||| || ||| |||||| | || || | || Sbjct 1802 TCACGTGCACGGTGCAG--CTCGTTACCATGGTTCTTGCGCAGATCCAAGAACTC-AAAC 1746 Query 149247 ATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGCTT---GCCGCCC 149303 | || ||||||||||| || | || | ||| | | |||||||| || || ||| Sbjct 1745 ACATCAGCGTGCCACGGTTCCAGATAAATCGCAAATGATCCCTTGCGTTTACCTCCACCC 1686 Query 149304 TGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTGGCA 149363 ||||| |||| || || | | |||||||||||| | ||| || ||||| ||| Sbjct 1685 TGGTCCACGTAACGTGCCGTATCGTTAAACACTCGCAGCATGGGGATGATGCCGTTGGAC 1626 Query 149364 GTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCCG 149423 | |||||| || || ||| ||| ||||| | ||||||| ||| ||| Sbjct 1625 GAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTAGCTCGGATGTTGTGCATACTGATGCCA 1566 Query 149424 ATGCCGCCGCCGTACTTTGAGATGGCCGCGCA--GTCGCCGAGCGTCGAGTAGATGCCCT 149481 ||||| || | |||| |||||| ||| || || | ||| ||| || ||||| | Sbjct 1565 ATGCCTCCTGCCCACTTGGAGATGCACGCACACTGTTTCAGAGTGTC--ATAAATGCCTT 1508 Query 149482 CGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTGC 149541 | || ||| || ||||| || || |||||||| ||| ||| ||| | || | Sbjct 1507 CAATAGAGTCATCCTGCATGGCCAACAAGAAGCACGAAGACAATTGTGGACGTGGGGTAC 1448 Query 149542 CGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCATCATCTCGTACG 149601 | || ||||| |||||| ||||||| || || |||| || ||| | ||||| | Sbjct 1447 CAGCATTGAACAGCGTGGGGGTGGCGTGGGTGAAGAATTTTTGCGACATGAGTTCGTAAG 1388 Query 149602 ACTCGAGCACGCGGTCCATGTCATCGCC--ATGGATGCCTATGGCGACGCGCATCAGCAT 149659 ||| || | | |||| ||| | |||||||||| || |||||||| | ||| Sbjct 1387 TCTCAAGTGCCGCCTTGATGT--TCGTCTTGTGGATGCCTAGAGCCACGCGCATGATCAT 1330 Query 149660 ATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAGCCGTTTTCTAGTGT 149719 ||||| || || ||| |||||||| | || | || || | || ||||| Sbjct 1329 CTGCTGGGGACGTTCCACCACTTTGCCGTGGACACGGAAGAGATATCCCCTCTCCAGTGT 1270 Query 149720 CTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAATGGC 149767 ||| ||||||| || | ||| |||||||| ||| | ||| |||||| Sbjct 1269 CTTAAAGCCAAAATAATCGTATTCAAAGTCTCGGTCATGGATAATGGC 1222 >seq241 Length=42966 Score = 125 bits (138), Expect = 7e-24 Identities = 122/157 (78%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 |||||||||||||||||| ||| | || || ||||||||||| || || || || ||||| Sbjct 916 GTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGAATTCCCTCCTT 857 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| ||| || ||||||| | |||| |||| | ||||||||||||| |||| Sbjct 856 GTCCTGGATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCACGTCGAGCGTGAT 797 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATG 133661 ||| ||||| ||||| || || || || ||||||||| Sbjct 796 GGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATG 760 >seq134 Length=62988 Score = 125 bits (138), Expect = 7e-24 Identities = 288/424 (68%), Gaps = 11/424 (3%) Strand=Plus/Plus Query 120354 GTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTTCAT 120413 ||||||||| || || ||||| || ||||| || ||||||| | || || ||| ||| Sbjct 13943 GTACTCGCCCACACGCTTCTCGAAGAAGTTAGTCTTGCCCTGTAGAGAGATCATGTCCAT 14002 Query 120414 AAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTG--TACGAGCAGT 120471 | || |||||||| | |||| || || | || |||| | ||| ||||| Sbjct 14003 CCAGTCAAACGGGTTCTTGACGTTGTAG-ATCTTGGACACACCAAGCGAATAC-AGCAGG 14060 Query 120472 CGGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAACGCC 120531 ||||| || || ||||||||||||| ||||||| | || ||||||||| | || | || Sbjct 14061 CGGTCTGCCACGAACTCAATGTACTGGCACATGAGCGCCGAGTTCATGCCGATCAGCTCC 14120 Query 120532 ACCGGCAACGCCGACG-TGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGGC 120590 || || | || | || | | |||||| | || || | ||| || || || || | Sbjct 14121 ACTGGGAGCG-AGTCGCTCACAAACTCGTGTTCGATCTTCACAGCGTCACGGATAATCTC 14179 Query 120591 GAGCATAGTGTGGCCGGGCATCTTGTGTTCGATGCGCGTTCG-GTAGTACAGGCACGCAA 120649 | ||| | || | |||| |||| || || |||| ||| |||| || |||| Sbjct 14180 GTGCACACGCTGCTCCGGCAGCTTG-GTCACCAGC---TTCGAGTACAACAGACAAGCAA 14235 Query 120650 AGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGGCA 120709 |||| ||||||| || || || || || ||||||||| || |||| || |||| Sbjct 14236 AGTCTGTGTGCATACCTTCATCACGACTAATGAGCTCGTTGGAGAAGCTCAGACCAGGCA 14295 Query 120710 TGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGCCCT 120769 ||| || | |||||| |||| |||| | |||| |||||| ||||| | |||| Sbjct 14296 TGAGACCACGCTTCTTGAGCCAGAAGATGGAGCAAAAGGAGCCCGAGAAGAAGATTCCCT 14355 Query 120770 CCAC 120773 |||| Sbjct 14356 CCAC 14359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483409185815280