Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000785735.2_202015-10- 23] 1,922 sequences; 36,590,891 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq213 192 7e-44 seq134 129 7e-25 >seq213 Length=42570 Score = 192 bits (212), Expect = 7e-44 Identities = 1171/1839 (64%), Gaps = 80/1839 (4%) Strand=Plus/Plus Query 104139 GAGACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGGC 104198 |||||| || | | ||||||||| | || || || |||| | | ||||| || Sbjct 1238 GAGACTTTGAATACGATTATTTTGGCTTTAAGACACTGGAGAGGGGATATCTCTTCCGTG 1297 Query 104199 TCGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTC 104258 || | || || ||||| || ||| | ||| ||||||||||||| | || || | Sbjct 1298 TCCACGGCAAAGTGGTGGAACGTCCCCAGCAGATGATCATGCGCGTGGCTCTAGGCATCC 1357 Query 104259 ATGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCA 104318 | | |||| | | | | ||||| ||||| ||||| ||| | |||| Sbjct 1358 ACAAGACGAACATCAAGGCGGCACTTGAGACTTACGAACTCATGTCGCAAAAATTCTTCA 1417 Query 104319 TTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCT 104378 ||||| || || || || |||||||||||||| ||| | || ||| |||| |||| Sbjct 1418 CCCACGCCACCCCCACGCTGTTCAATGCTGGTACCCCACGTCCACAATTGTCTTCGTGCT 1477 Query 104379 TCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTG 104438 || | | |||| |||| ||||| || | || || |||| ||||| | |||||| Sbjct 1478 TCTTGTTGGCCATGCAGGATGACTCTATTGAAGGCATTTATGACACTCTGAAACAGTGTG 1537 Query 104439 CGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATA 104498 || ||||| |||||||| || || ||||| || || || | | |||| | || Sbjct 1538 CGTGCATCTCCAAGTGGGCAGGAGGCATTGGCATCAGTATGCACAACATCCGAGCTACTA 1597 Query 104499 A-ATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTA 104557 | | || || || || || || || || | || || || || ||||| || || Sbjct 1598 ACAGCT-ACATCCGCGGCACGAACGGCTCGTCCAACGGCATCATCCCCATGCTGCGAGTG 1656 Query 104558 TTTAACGCCACAGCGCGCTATGTAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCA 104614 ||||||| || || || || || | || | ||| || || |||||||| | || Sbjct 1657 TTTAACGATACGGCACGTTACGTGGACCAGGGTGGAGGTAAACGCAAGGGATCATTTGCG 1716 Query 104615 GTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAA 104674 | ||||| || || |||||||| ||| | | |||||| | || |||| ||||| Sbjct 1717 ATTTATCTGGAACCGTGGCACGCTGATGTGTTTGAGTTCTTGGATCTGCGCAAGAACCAT 1776 Query 104675 GGTGACGAGGAGGCGCGGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTT 104733 ||| |||| | || | |||| || || | |||| ||||| ||| | || ||||| || Sbjct 1777 GGTAACGA-GCTGCACCGTGCACGTGACTTGTTCTATGCTCTGTGGGTGCCGGATCTATT 1835 Query 104734 CATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGG 104793 ||||||| | || |||| | |||||| ||| | | || ||||| || |||| || || Sbjct 1836 CATGAAGCGTGTGGAGGCCAATGGCAAGTGGAGTTTGTTCTGTCCCAACGAGGCTCCCGG 1895 Query 104794 TCTCTCCGA-TGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAG 104852 ||| | ||| ||| | ||| |||||||| || | || | ||||||||| |||| Sbjct 1896 TCTGTACGAGTGCTG-GGGAGAGGAGTTCGAGACGCTGTTTGAGAAGTACGAGCGTGAAG 1954 Query 104853 GTCGGGCGACTGC--GACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCA 104910 | | ||| | || ||| | ||| | ||||| |||||||| | | || Sbjct 1955 GCC--GCGCCCGCAAGACAATCAATGCTCAACAGCTGTGGTTCGCTATTCTGGACGCGCA 2012 Query 104911 AACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCA 104970 | ||||| || || | |||| | ||||| |||||| |||| ||| |||||| Sbjct 2013 GATTGAGACGGGCGTGCCTTTCATGTTATACAAGGACGCCGCCAACCGCAAGTCTAATCA 2072 Query 104971 AAAGAATTTGGGTGTGAT---CAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTAC 105027 |||| | || ||| | ||| ||| | || ||| | |||| | ||| Sbjct 2073 GCAGAACCTCGGCACGATTCGCTCGAG---CAACTTGTGCTGTGAAGTGATGGAGTATAC 2129 Query 105028 AGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA 105087 |||||| ||| ||||| ||| | || || | || |||||||||| || | Sbjct 2130 GTCGCCTGATGAGGTGGCCGTGTGCAACTTGGCGTCCGTGGCGCTCCCCAAGTTCGTTG- 2188 Query 105088 TCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACG-AAAACTG-TCACC 105145 ||| || | ||| | || | || || | || || || || || |||| Sbjct 2189 ---AGA-ACGCCG-TATTCAACTACAAGAAGCTGTATGATGT--CGTCAAGGTGATCACA 2241 Query 105146 AAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCG---TTGAGACTGCTCGTAAA 105202 ||||| |||| || || || || | ||||||| ||||| ||||| || Sbjct 2242 CGCAACCTGAACAAGGTCATCGACGTCAACTACTACCCCGTTATTGAG---GCTCGCAAT 2298 Query 105203 TCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCAT- 105261 || || ||| | |||||||| ||||| | ||||| ||||| || ||||| | ||||| Sbjct 2299 TCCAACATGCGTCACCGTCCTGTTGGTATTGGTGTGCAGGGCCTTGCGGACGCTTTCATC 2358 Query 105262 -TCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTG 105320 || | | | || || |||| || ||| || |||| | || || | Sbjct 2359 CTCATGGACTTTGCGTTCGAGAGTCCG--GAGGCGCGTGAGCTCAACAAGAATATCTTCG 2416 Query 105321 AGACCATGTATCACGCCGCTCTTGAGGCGAGTTCA---GAGTTGGCAGAGG--TTGATGG 105375 ||||||| || |||| || | ||| || ||| || |||| || ||| || Sbjct 2417 AGACCATCTACTACGCTTCTATGGAGACG---TCAATGGAACTGGCCACGGAATTG--GG 2471 Query 105376 TCCATATGAAACCTTTGAGGGTTCTCCAGCTTCA-CAAGGGGTGCTT-CAATTTGATATG 105433 || || || || || ||||||| || || || |||||| ||| || || |||||| Sbjct 2472 CCCGTACGAGACTTTCCAGGGTTCGCCTGC--CAGCAAGGGTATCTTCCAGTTCGATATG 2529 Query 105434 TGGGAAGGTGAGACCAAGCT----TCACTACGACTGGGAAGCTCTCAAGGA-ACG--CAT 105486 | |||| || | || || || | ||||||| || || ||||| | | | Sbjct 2530 T-GGAACGTCACGCCTTCCTCCGGTCTGTGGGACTGGGCTGCGCTTAAGGAGAAGGTGGT 2588 Query 105487 CAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGC 105546 || |||| || || || || ||||| | || || ||||| || || || || || Sbjct 2589 CA---AGAACGGCCTGCGCAATTCGCTCCTGGTCGCGCCGATGCCGACGGCGTCTACGGC 2645 Query 105547 ACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAG 105606 ||| ||| | |||||||| || | | ||||| | ||| | ||||| || | | Sbjct 2646 ACAGATCCTCGGTAATAACGAGTCTATCGAACCGTTCACCTCTAACATGTACAACCGCCG 2705 Query 105607 AACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATCTCGTGGATGACCTCAAAGAGAT 105666 || |||||||||||| || || |||||| | || || |||| || | ||| | Sbjct 2706 CGTGCTTGCGGGAGAGTTTACCATCGTGAACAAGTACCTGATGAATGAGCTGATTGAGCT 2765 Query 105667 TGGTCTCTGGTCCAAGGATATGAAGGATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAA 105726 ||| | ||| | || || | | || |||| | || ||||| | || || Sbjct 2766 GGGTGTGTGGGCTCCTGAGGTGCGTAACCAGATCTTGAATGACGGCGGTTCGGTGCAGAA 2825 Query 105727 TATTGTG-GAT--ATTCCAAATGAAATTAAGAAGTTGTACCGCACAGTTTGGGAAATCAA 105783 |||| | | ||||| | | || ||| || |||| || || ||||| ||||| Sbjct 2826 ---TGTGAGCTCCATTCCGGACCACATCAAGGAGAAGTACAAGACGGTGTGGGAGATCAA 2882 Query 105784 GATGAAG--GATGTCATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAA 105841 | |||| ||| || | ||| || | || ||||||||| || ||| ||| ||||| Sbjct 2883 GCAGAAGTCGAT-TC-TGGACCTGTCTGCGGATCGTGGTGCCTACATCTGTCAGAGTCAG 2940 Query 105842 AGTATGAA---TCTCTTCATGGAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCACATG 105898 |||| || | || ||| || || | |||||| | || |||||| | Sbjct 2941 TCGCTGAACATTCACATCGCCGAA---CCGACAAAAAGCAAGCTTACATCGATGCACTTT 2997 Query 105899 TACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTAC 105937 ||| ||||||||||| ||||| ||||| ||||| ||| Sbjct 2998 TACGCGTGGAAGAAGGGGCTCAAGACGGGCATGTACTAC 3036 >seq134 Length=62988 Score = 129 bits (142), Expect = 7e-25 Identities = 201/285 (71%), Gaps = 2/285 (1%) Strand=Plus/Minus Query 94672 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAA 94731 ||||| |||| ||| || ||||| | || |||||| | || || | || || | Sbjct 14515 CTCATTGACACGTACATCAAGGACGCTGTGGAGAAGGACCACCTGCTGCGTGCAATTGAG 14456 Query 94732 ACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATAC-AAAGTC 94790 || | |||||| | ||||| ||| |||||| | | |||| || | ||||| Sbjct 14455 ACCATCCCGTGTGTGACCAAGAAGGCGAGTTGGGCGCTAAGATGGTGCGACCCGAAAGTG 14396 Query 94791 GCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 94850 | | | | | ||||| || | |||||||| ||| ||||| ||||||||||| || Sbjct 14395 TCCT-CATACCCGGAGCGTCTTCTGGCATTTGCAGCTGTGGAGGGAATCTTCTTCTCGGG 14337 Query 94851 TTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 94910 ||||| ||| | || | |||||||||||||| ||||||||||| ||||| ||||||| Sbjct 14336 CTCCTTTTGCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGAGCTTCTC 14277 Query 94911 CAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||||||||| || |||||| || || | ||| ||| ||||| Sbjct 14276 CAACGAGCTCATTAGTCGTGATGAAGGTATGCACACAGACTTTGC 14232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583246787159280