Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000785735.2_202015-10- 23] 1,922 sequences; 36,590,891 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1811 91.5 4e-13 seq1683 91.5 4e-13 seq1398 89.7 2e-12 seq213 89.7 2e-12 >seq1811 Length=1553 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| |||| ||||||| ||||||||| ||||||||||||||| |||||| | | Sbjct 23 GGGGATGTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACAGGGATCGATA 82 Query 235950 CCCAGCATCTCCA 235962 ||| || |||||| Sbjct 83 CCCTGCTTCTCCA 95 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| |||| ||||||| ||||||||| ||||||||||||||| |||||| | | Sbjct 823 GGGGATGTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACAGGGATCGATA 882 Query 235950 CCCAGCATCTCCA 235962 ||| || |||||| Sbjct 883 CCCTGCTTCTCCA 895 >seq1683 Length=1310 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| |||| ||||||| ||||||||| ||||||||||||||| |||||| | | Sbjct 285 GGGGATGTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACAGGGATCGATA 226 Query 235950 CCCAGCATCTCCA 235962 ||| || |||||| Sbjct 225 CCCTGCTTCTCCA 213 >seq1398 Length=1909 Score = 89.7 bits (98), Expect = 2e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 74488 GTGGGATTCGAACCCACGAGTCTTACGACAGTAGAACTTGAGTCTACCCCCTTAGACCAC 74547 |||||||| |||||||||||| | ||||||||||||||||||||||||||||||| | Sbjct 1743 GTGGGATTTGAACCCACGAGTGCGAACACAGTAGAACTTGAGTCTACCCCCTTAGACCGC 1802 Query 74548 TCGGGCA 74554 ||||||| Sbjct 1803 TCGGGCA 1809 >seq213 Length=42570 Score = 89.7 bits (98), Expect = 2e-12 Identities = 195/292 (67%), Gaps = 0/292 (0%) Strand=Plus/Minus Query 206444 CACACTGGTCAATATATCGAGCTGTTTTATTAAATACGCCTAGCATAGGAATAATACCAT 206503 ||| |||||| | || || || || | ||||| || | ||||| || || || || | Sbjct 1690 CACCCTGGTCCACGTAACGTGCCGTATCGTTAAACACTCGCAGCATGGGGATGATGCCGT 1631 Query 206504 TAGAAGTTCCATTTGTTCCTCTAATATGACTGCCAGTCCCTCTAATATTATGTATATGTA 206563 | || | || || || || | || | ||| ||| ||| || || || ||| | Sbjct 1630 TGGACGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTAGCTCGGATGTTGTGCATACTGA 1571 Query 206564 ATCCAATTCCTCCTGCCCATTTTGAAATATTAGCACATTCTTTTAATGTATTATAAATTC 206623 ||||| ||||||||||| || || || ||||| | ||| | || | |||||| | Sbjct 1570 TGCCAATGCCTCCTGCCCACTTGGAGATGCACGCACACTGTTTCAGAGTGTCATAAATGC 1511 Query 206624 CATCAACACTATCACTTTCCATAGCAATTAAAAAACAAGAACTTAATTGTGGTCGTGGCG 206683 | |||| | ||| | ||| || | || || || ||| |||||||| ||||| | Sbjct 1510 CTTCAATAGAGTCATCCTGCATGGCCAACAAGAAGCACGAAGACAATTGTGGACGTGGGG 1451 Query 206684 TTCCAGCATTAAATAAAGTAGGAGTAGCATGTGTAAAATATTTTTGAGACAT 206735 | |||||||| || | || || || || || || || ||||||| ||||| Sbjct 1450 TACCAGCATTGAACAGCGTGGGGGTGGCGTGGGTGAAGAATTTTTGCGACAT 1399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515217085913366