Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000785735.2_202015-10- 23] 1,922 sequences; 36,590,891 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq73 185 7e-42 >seq73 Length=89798 Score = 185 bits (204), Expect = 7e-42 Identities = 449/667 (67%), Gaps = 25/667 (4%) Strand=Plus/Minus Query 29876 AGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCC 29935 ||||| || |||| | |||||| ||||| || || || | |||||| ||| || || Sbjct 88110 AGCGGCTCTACGTGGTTCAGGTATACGTGTGCATCACCAATAATGTGGATAAATTCGCCA 88051 Query 29936 GGTTCTAGCCCGGTGACGTGAGCCATCATGTA-CGTGAGGAGAGAGTAGCTGGCGATGTT 29994 |||| | || | || || |||| || || ||| || || | || ||||||||||| Sbjct 88050 GGTTTCAAACCAGCCACTTGGGCCA-CAAGTCGCGTCAGTAGCGCATAACTGGCGATGTT 87992 Query 29995 AAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCC 30054 || || || ||||| |||||||| |||| | |||||| | ||||||||| | ||| || Sbjct 87991 GAACGGCACGCCGAGGCCCATGTCAGCCGAACGCTGGTACATCTGACACGATAACTCGCC 87932 Query 30055 GTCGCTCACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCA---A 30111 || ||||||||||||||| | ||| || || || || ||||| | || | Sbjct 87931 ATCCGCCACGTAAAACTGACAAAACATGTGACATGGTGGCAGCGCCAT----CTCATTGA 87876 Query 30112 G-TCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTC-TTCTGGGTTGTTCCT--GA 30167 | || || ||||| || ||| | || || | ||| || || |||| | | Sbjct 87875 GATCCGCTGGATTCCACGCAGACAACACAATCCGACGGTCGGTCGGGTTTGTGCGTAGTT 87816 Query 30168 TGAGGTCCACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATG 30226 || || ||| | || || |||||||||||| || | ||||||||| ||| Sbjct 87815 TGTGGATCAC----CTCAGCAAGTTGATCCACCCCCTGTCCAGTGTAGTCTGCATGCATA 87760 Query 30227 TCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCC 30286 |||||||||| ||||| || || | ||||||||| || ||||| |||||||||||||| Sbjct 87759 TCCGTGTACTTGGCTCCAAAGTGACGCCACTGGAATCCATACACTGGTCCCAGGTCTCCT 87700 Query 30287 TCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAG 30346 ||||||| || | || | |||||||| | |||| || || ||| | |||||| Sbjct 87699 ACTTCCCTCGACTGCAGTCCACGACTGTCCAAATACTCTCGCGATCCATTGCCATCCCAG 87640 Query 30347 ATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGC 30406 || | | |||||| ||| | | | || ||| || | ||||||||| Sbjct 87639 ATATGAATGTCCTTCTGCTGCAGCGTATGCGCACTCGTATCCCCACTAATGAACCACAGT 87580 Query 30407 AGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAAC----TG 30462 | |||||| | || | |||| || || ||||| ||||| || | || ||| | Sbjct 87579 AATTCCTCCGCCACACCTCTCCAGAATACTCTCTTAGTCGTCAGCAACGGGAACACGTTA 87520 Query 30463 TCCCTTGAGGCCGTACCTGGCCTGAGAACCAAACACGGACAAGACTCCC-GTGCCCGTCC 30521 |||| | || | | | ||||| ||||| || ||||| | |||| || ||||||| Sbjct 87519 TCCC-TCAGACTAAAGCGCATCTGAGCCCCAAATACCGACAA-AGTCCCTGTCCCCGTCC 87462 Query 30522 TGTCTCC 30528 |||||| Sbjct 87461 GGTCTCC 87455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406300882432824