Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000785735.2_202015-10- 23] 1,922 sequences; 36,590,891 total letters Query= NC_028785.1 Length=72790 Score E Sequences producing significant alignments: (Bits) Value seq77 98.7 5e-16 >seq77 Length=86351 Score = 98.7 bits (108), Expect = 5e-16 Identities = 320/493 (65%), Gaps = 13/493 (3%) Strand=Plus/Plus Query 64220 ATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGAC 64279 ||||| ||||| ||| || | ||| || | |||||||||||| | ||||| ||| |||| Sbjct 48170 ATCGATGCTGAACACGCCATTGACGCTCACTACGCCAAGGCGTTGGGTGTCGACATCGAT 48229 Query 64280 AACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTC 64339 | || || ||||| || | |||||| | || |||| |||| || || Sbjct 48230 GAGCTGTACGTTTCCCAGCCCGATTCGGGCGAGGAAGCTTTGGAAATCGCCGATACTCTG 48289 Query 64340 GTCAAGTCTGGCGAGCTGTCCATC--GTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGC 64397 || ||| || | ||||| | | ||||| | || ||| || || || || |||| Sbjct 48290 ATCCGGTCCGGTG--CTGTCGACCTTGTCGTGCTGGATAGTGTAGCAGCTCTCGTACCGC 48347 Query 64398 GCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGT 64457 | || ||||| || || || || || ||| || | | ||||| |||||||||||| Sbjct 48348 GTGCTGAGCTGGAGGGTGAAATGGGTGACCAGCAGATTGCACTGCAAGCGCGCCTCATGA 48407 Query 64458 CGCAGGCCATGCGCAAGCTCACCGGCACCATCTCCAGCACCAAC---ACGCTGACGCTCT 64514 || || ||||||||||||| || | | |||| ||||| || | | ||| Sbjct 48408 GTCAAGCTTTGCGCAAGCTCACAGGTTCGCTGTCCAAGTCCAACTGTACCATCA---TCT 48464 Query 64515 GGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAACGAGACCACCA 64574 | |||||| | ||| ||||| | |||| | || || | ||| || Sbjct 48465 TCCTGAACCAGATCCGCCAGAAGGTTGGCA---TTATCTTTGGATCTCCTGAGGTGACAT 48521 Query 64575 CGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCA 64634 | || || | ||||| | | |||||| || || || | ||| |||| |||| | Sbjct 48522 CTGGTGGAACAGCTTTACGCTACTACGCGTCCGTACGGCTAGATATCCGCCGCAAAACGG 48581 Query 64635 CCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACA 64694 || || || ||||| ||| ||| |||||| || || ||||| | ||||||| Sbjct 48582 CCATCAAAGAGGGCGACCAGGTTGTAGGCAACGAGACGGTAGTCAAGGTGGCTAAGAACA 48641 Query 64695 AGCTGGCCCCGCC 64707 |||||||| |||| Sbjct 48642 AGCTGGCCTCGCC 48654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 232797746730542