Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000785735.2_202015-10- 23] 1,922 sequences; 36,590,891 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq73 170 2e-37 >seq73 Length=89798 Score = 170 bits (188), Expect = 2e-37 Identities = 463/698 (66%), Gaps = 13/698 (2%) Strand=Plus/Plus Query 34151 GGGGACCGGACCGGGACGGGGACCCTCTCCGTGTTCGGCACACAGGCCCGATACAACCTT 34210 || |||||||| ||||| ||||| | || || || || | ||| || | | || Sbjct 87455 GGAGACCGGACGGGGACAGGGACTTTGTCGGTATTTGGGGCTCAGATGCGCTTTAGTCTG 87514 Query 34211 CGGGG---CGAATTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAG 34267 ||| || || ||| |||||||||| || | || | ||||| || |||| ||| Sbjct 87515 AGGGATAACGTGTTCCCGTTGCTGACGACTAAGAGAGTATTCTGGAGAGGTGTGGCGGAG 87574 Query 34268 GAGCTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTG 34327 || | ||||||||| | || |||| |||| | | ||| | || | Sbjct 87575 GAATTACTGTGGTTCATTAGTGGGGATACGAGTGCGCATACGCTGCAGCAGAAGGACATT 87634 Query 34328 AAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGG 34387 | |||||||| | | || || ||||| | | |||||| || || | | || || Sbjct 87635 CATATCTGGGATGGCAATGGATCGCGAGAGTATTTGGACAGTCGTGGACTGCAGTCGAGG 87694 Query 34388 GAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTAT 34447 || | || ||| |||| || || || || ||||||||| | |||||||| || |||| Sbjct 87695 GAAGTAGGAGACCTGGGACCAGTGTATGGATTCCAGTGGCGTCACTTTGGAGCCAAGTAC 87754 Query 34448 CGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCT-GCAGTACGTGATCGA 34506 || | | || ||||| | |||||||| | ||| || || || | | |||||| | Sbjct 87755 ACGGATATGCATGCAGACTACACTGGACAGGGGGTGGATCAACTTGCTG-AGGTGATCCA 87813 Query 34507 CACCTTGAAGCGGAACCCTGAT-GACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGG 34565 || | | || || || || ||| | |||| ||| ||| |||||||| || || Sbjct 87814 CAAACT-ACGCACAAACCCGACCGACCGTCGGATTGTGTTGTCTGCGTGGAATCCAGCGG 87872 Query 34566 ATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATG 34625 ||||| | ||||||||| || || || |||| | || || || ||||| ||| ||| Sbjct 87873 ATCTCAATGAGATGGCGCTGCCACCATGTCACATGTTTTGTCAGTTTTACGTGGCGGATG 87932 Query 34626 GGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCA 34685 | ||| | || || ||| | || || || |||| |||||||| | || |||||||||| Sbjct 87933 GCGAGTTATCGTGTCAGATGTACCAGCGTTCGGCTGACATGGGCCTCGGCGTGCCGTTCA 87992 Query 34686 ACATTGCTAGTTACGCTCTGCTCACG-TACATGATCGCTCATGTCGTGGGGTTGGTTCCT 34744 |||| || ||||| || || || ||| || || | || || || | || ||| ||| Sbjct 87993 ACATCGCCAGTTATGCGCTACTGACGCGACTTG-TGGCCCAAGTGGCTGGTTTGAAACCT 88051 Query 34745 GGGGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTC 34804 || || | | || | | || ||||| || | |||||||||||| | |||| ||| Sbjct 88052 GGCGAATTTATCCACATTATTGGTGATGCACACGTATACCTGAACCACGTAGAGCCGCTT 88111 Query 34805 CGGATCCAGCTGCAACGAGAGCCC--CGACCGTTCCCC 34840 | | ||||| |||| | ||| ||||| |||||| Sbjct 88112 CAAAAACAGCT--AACGCGCACCCCGCGACCATTCCCC 88147 Score = 170 bits (188), Expect = 2e-37 Identities = 463/698 (66%), Gaps = 13/698 (2%) Strand=Plus/Minus Query 6505 GGGGAACGGTCG--GGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTCAGG 6562 |||||| ||||| ||| | |||| ||||| | | ||| |||| | |||||||||| Sbjct 88147 GGGGAATGGTCGCGGGGTGCGCGTT--AGCTGTTTTTGAAGCGGCTCTACGTGGTTCAGG 88090 Query 6563 TAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCCACGACATGA 6622 || | || ||||| || | | || | | || ||||| ||| || | || || Sbjct 88089 TATACGTGTGCATCACCAATAATGTGGATAAATTCGCCAGGTTTCAAACCAGCCACTTGG 88030 Query 6623 GCGATCATGTA-CGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCAT 6681 || | || || ||| || || || ||||| || |||||||||||||| || | ||||| Sbjct 88029 GCCA-CAAGTCGCGTCAGTAGCGCATAACTGGCGATGTTGAACGGCACGCCGAGGCCCAT 87971 Query 6682 GTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGGCA 6741 ||| |||| || || || | ||| || || | ||| |||| ||| ||||| || || || Sbjct 87970 GTCAGCCGAACGCTGGTACATCTGACACGATAACTCGCCATCCGCCACGTAAAACTGACA 87911 Query 6742 GAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACAT 6801 | |||| || || || ||||||||| | ||||||| || |||||||| ||| Sbjct 87910 AAACATGTGACATGGTGGCAGCGCCATCTCATTGAGATCCGCTGGATTCCACGCAGACAA 87851 Query 6802 CACGATCCTTCTGTC-ATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGC-AGCTGG 6859 ||| |||| | ||| || || || || | | ||| |||||| | | || || || Sbjct 87850 CACAATCCGACGGTCGGTCGGGTTTGTGCGT-AGTTTGTGGATCACCT-CAGCAAGTTGA 87793 Query 6860 TCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTC 6919 ||| | |||||||| | ||||| || | | || |||| || |||||||| | | Sbjct 87792 TCCACCCCCTGTCCAGTGTAGTCTGCATGCATATCCGTGTACTTGGCTCCAAAGTGACGC 87733 Query 6920 CACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCGCTTG 6979 |||||||| || || || || |||| ||| || | |||| || | | || || || Sbjct 87732 CACTGGAATCCATACACTGGTCCCAGGTCTCCTACTTCCCTCGACTGCAGTCCACGACTG 87673 Query 6980 TCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACGAGAGCTCC 7039 |||| | | ||||| || || | | |||||||| | | || | ||| Sbjct 87672 TCCAAATACTCTCGCGATCCATTGCCATCCCAGATATGAATGTCCTTCTGCTGCAGCGTA 87613 Query 7040 TTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTTCCAGTAC 7099 | | |||| |||| || | ||||||||| | ||||| |||| || ||||| | Sbjct 87612 TGCGCACTCGTATCCCCACTAATGAACCACAGTAATTCCTCCGCCACACCTCTCCAGAAT 87553 Query 7100 ACACGTTTCGTCGTCAGCAGCGGAAATTCG---CCCCGAAGGTTGTATCGGGCCTGTGTG 7156 || | || |||||||||| ||| || || ||| || | | || ||| | Sbjct 87552 ACTCTCTTAGTCGTCAGCAACGGGAACACGTTATCCCTCAGACTAAAGCGCATCTGAGCC 87493 Query 7157 CCGAACACGGAGAGGGTCCCCGTCCCGGTCCGGTCCCC 7194 || || || || | ||||| ||||| |||||||| || Sbjct 87492 CCAAATACCGACAAAGTCCCTGTCCCCGTCCGGTCTCC 87455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448251630495840