Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000785735.2_202015-10- 23] 1,922 sequences; 36,590,891 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq241 145 7e-30 seq202 116 3e-21 >seq241 Length=42966 Score = 145 bits (160), Expect = 7e-30 Identities = 149/192 (78%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| ||||| ||||| ||||| ||||| |||| |||||||||||||||||||| | Sbjct 950 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 891 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG 41792 |||| ||||| ||||| | |||| | |||||||||| |||||| ||||| || | Sbjct 890 TCAGACGCTGCTGGTCAGGCGGAATTCCCTCCTTGTCCTGGATTTTCTGCTT-GACATTG 832 Query 41793 ACACAG-TGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851 || | |||| || |||||| || | ||| || || || |||||||| ||||| || Sbjct 831 TCAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACA 772 Query 41852 AAAATCTGCATG 41863 || ||||||||| Sbjct 771 AAGATCTGCATG 760 >seq202 Length=44642 Score = 116 bits (128), Expect = 3e-21 Identities = 101/124 (81%), Gaps = 1/124 (1%) Strand=Plus/Plus Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692 || || || || ||||| | |||||| || ||||||||||||||||| ||||| ||||| Sbjct 8671 CCACCACCACGCAGACGCAGCACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCC 8730 Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGC 41751 || || ||||| |||| || ||||||||||| ||||| ||||| ||||| ||||| || Sbjct 8731 GACAGAGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGC 8790 Query 41752 GGGA 41755 |||| Sbjct 8791 GGGA 8794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462292893146400