Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001707905.1_202016-08- 18] 2,393 sequences; 38,203,779 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq1376 136 4e-27 >seq1376 Length=62984 Score = 136 bits (150), Expect = 4e-27 Identities = 387/585 (66%), Gaps = 10/585 (2%) Strand=Plus/Minus Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258 ||||| || ||||| || | ||||| || | || || || |||||||| || | Sbjct 48835 AGACAAGCAAAGTCTGTGTGCATACCTTCATCACGACTAATGAGCTCGTTGGAGAAGCTC 48776 Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATG-ACCCCGAAAA 16317 | || ||||| || || ||||| | |||||| || | |||||| | | ||||| || Sbjct 48775 AGACCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGG-AGCAAAAGGAGCCCGAGAA 48717 Query 16318 GAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATT 16377 ||| || ||||| |||| |||||| || | | || |||| ||| | | |||| Sbjct 48716 GAAGATTCCCTCCACAGCTGCAAATGCCAGAAGACGCTCCGGGTATGAGGACACTTTCGG 48657 Query 16378 A-CGAATCCATTTCTGTACCCAT-TCGGCTTTTTGTTTTATACAATCCATCGTTTCTATG 16435 || | |||| | | |||| ||| ||| ||| | | ||| || || || || Sbjct 48656 GTCGCA-CCATCTTAGCGCCCAACTCGCCTTCTTGGTC-ACACACGGGATGGTCTCAATT 48599 Query 16436 GCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTG 16495 || | || | || || ||| | || | || ||||| ||||| || | | Sbjct 48598 GCACGCAGCAGGTGGTCCTTCTCCACAGCGTCCTTGATGTACGTGTCAATGAGCAGCGAG 48539 Query 16496 TACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCC 16555 |||| |||||||| |||||||| ||||| || || || || |||||||| |||||||| Sbjct 48538 TACACCTCTGAGTGGATGTTCTCAATGGCAATTTGGAAGCCGTAGAAGCAACGAGCCTCA 48479 Query 16556 GCTATTTGTACTTCCACGTAAAATCGTTCC--GCCAGGTTCTCATTCACGATACCGTCAC 16613 | | |||||||| | ||| |||| ||||||||||| |||||||| || |||| Sbjct 48478 GGCACCTGTACTTCATTGCTAAA--GTTCATAGCCAGGTTCTCGTTCACGATGCCATCAC 48421 Query 16614 TTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATAT 16673 | || ||||| || ||||| | |||||| ||||| | |||| ||| || | Sbjct 48420 TGGCGGCAAAGAAGGCCAAGACGTGCTTGATGAAGTGACGCTCGTTGTCTGTGAGGTTTC 48361 Query 16674 GCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTG 16733 ||| || || | || | | |||| ||||| | ||||| ||||| ||| | | Sbjct 48360 CCCAGTCCTTGAGGTCGTGTACCAAGTCCAGCTCTTCCGCAGTCCAGAAGCTGGCCTCCG 48301 Query 16734 CCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAATA 16778 |||| || ||||| | ||| | || | | || ||||| |||| Sbjct 48300 CCTTCTTGTACATCTGCCACACGTCGTGCTCCTGGATGGGGAATA 48256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511399102316760