Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001707905.1_202016-08- 18] 2,393 sequences; 38,203,779 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq275 140 3e-28 seq2310 127 2e-24 seq1614 105 6e-18 seq322 105 6e-18 seq1862 102 7e-17 >seq275 Length=4371 Score = 140 bits (154), Expect = 3e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||| | ||||||||| || || |||||||| ||||||| ||||| ||||| Sbjct 158 CACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTC 217 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || || ||| |||| ||||||||||| || || || ||||| ||||||||| Sbjct 218 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTG 277 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||||| || || || | |||| | ||||| ||| || |||| || | || || Sbjct 278 GATTTTCTGCTTCACATTGTCGATCGAGTCCGAAGGCTCCACGTCGAGCGTGATGGTCTT 337 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| ||||| || || ||||| |||||||| Sbjct 338 GCCCGTCAGTGTCTTCACAAAGATCTGCAT 367 Score = 86.0 bits (94), Expect = 5e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| ||||||||||| || || || ||||| ||||||||| ||||| || || Sbjct 4369 GCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGGATTTTCTGCTTC 4310 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| | ||||| ||| || |||| || | || ||||| ||||| || Sbjct 4309 ACATTGTCGATCGAGTCCGAAGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGTGTC 4250 Query 118722 TTTACAAAAATCTGCAT 118738 || ||||| |||||||| Sbjct 4249 TTCACAAAGATCTGCAT 4233 Score = 82.4 bits (90), Expect = 7e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| ||||||||||| || || || ||||| ||||||||| ||||| || || Sbjct 3 GCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGGATTTTCTGCTTC 62 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| | ||||| ||| || |||| || | || ||||| ||||| || Sbjct 63 ACATTGTCGATCGAGTCCGAAGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGTGTC 122 Query 118722 TTTACAAAAATCTGCATG 118739 || || || ||||||||| Sbjct 123 TTCACGAAGATCTGCATG 140 >seq2310 Length=42645 Score = 127 bits (140), Expect = 2e-24 Identities = 303/457 (66%), Gaps = 6/457 (1%) Strand=Plus/Plus Query 132917 GCGCAAATAATACATGCCCGTTTTCAGTTTTTTCTCCCACGCGTAAAAGTGTATGCTCGA 132976 ||||| || ||||||||||| || || |||| ||||||||||||||| || ||| Sbjct 39601 GCGCATGTAGTACATGCCCGTCTTGAGCCCCTTCTTCCACGCGTAAAAGTGCAT---CGA 39657 Query 132977 CACCACCGAG---TAAGTGGGTTCGGCGACAAATAAATTCAGCGATTGACTCTGATCTAT 133033 | | | | || |||||||||| | |||||||| ||||||||| || Sbjct 39658 TGTAAGCTTGCTTTTTGTCGGTTCGGCGATGTGAATGTTCAGCGACTGACTCTGACAGAT 39717 Query 133034 GAAAGGAGCACGGTCGGCGGCCATGTTTATTATACACTTTGATTTGATCTCCCATGCCGT 133093 | | | | |||| || || | || || | || |||| ||||||||||| |||| Sbjct 39718 GTAGGCACCACGATCCGCAGACAGGTCCAGAATCGACTTCTGCTTGATCTCCCACACCGT 39777 Query 133094 CTTGAAGAGATTCTTGACATGCTGTGGTATTTCGTCAATGTTCTGCACGGACCCGTTTTC 133153 |||| | | ||||| || | || || | | |||||||| || ||| || Sbjct 39778 CTTGTACTTCTCCTTGATGTGGTCCGGAATGGAGCTCACATTCTGCACCGAACCGCCGTC 39837 Query 133154 GGCCAAAATCTTGTTGCGCAATTCCGGAGTGTAAATGTCGAGATCGATTAGCGCTTTGAC 133213 ||| |||| ||| |||| || |||| | | | || || || ||| | || | Sbjct 39838 ATTCAAGATCTGGTTACGCACCTCAGGAGCCCACACACCCAGCTCAATCAGCTCATTCAT 39897 Query 133214 GAGATACTGGTTGACCACTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCGA 133273 || |||| ||| || | |||||| || || || ||||| | | || | || || Sbjct 39898 CAGGTACTTGTTCACGATGGTAAACTCTCCCGCAAGCACGCGGCGGTTGTACATGTTAGA 39957 Query 133274 CGTGAACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCAT 133333 ||||||||||||| ||| ||||| || ||||| ||||| ||||| | |||||| ||||| Sbjct 39958 GGTGAACGGTTCGATAGACTCGTTATTACCGAGGATCTGTGCCGTAGACGCCGTCGGCAT 40017 Query 133334 GTACGCCACCAACAAAGAGTTTCTTACGCCGTACTTG 133370 ||| |||| | || || | | ||||| |||| Sbjct 40018 CGGCGCGACCAGGAGCGAATTGCGCAGGCCGTTCTTG 40054 >seq1614 Length=15272 Score = 105 bits (116), Expect = 6e-18 Identities = 94/118 (80%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||| | ||||||||| || || |||||||| ||||||| ||||| ||||| Sbjct 15151 CACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTC 15210 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCT 118646 ||||| || || ||| |||| ||||||||||| || || || ||||| ||||||||| Sbjct 15211 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCT 15268 >seq322 Length=29637 Score = 105 bits (116), Expect = 6e-18 Identities = 94/118 (80%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||| | ||||||||| || || |||||||| ||||||| ||||| ||||| Sbjct 122 CACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTC 63 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCT 118646 ||||| || || ||| |||| ||||||||||| || || || ||||| ||||||||| Sbjct 62 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCT 5 >seq1862 Length=11309 Score = 102 bits (112), Expect = 7e-17 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || || |||||||| || | ||||| ||||||||||| || || ||| |||| Sbjct 8667 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 8608 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 ||||||||||| || || || || ||||||||||| ||||| || || || | || Sbjct 8607 AGACGCTGCTGGTCAGGCGGAATTCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 8548 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730 | | |||||| ||| || |||| || | || ||||| ||||| || || ||||| Sbjct 8547 ATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAG 8488 Query 118731 ATCTGCATG 118739 ||||||||| Sbjct 8487 ATCTGCATG 8479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433817747471956