Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001707905.1_202016-08- 18] 2,393 sequences; 38,203,779 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq275 150 1e-31 seq1862 118 7e-22 seq2313 100 2e-16 seq322 96.9 2e-15 seq1614 95.1 8e-15 >seq275 Length=4371 Score = 150 bits (166), Expect = 1e-31 Identities = 184/248 (74%), Gaps = 5/248 (2%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||||||||||| | ||| || ||||| |||||||||||| | Sbjct 141 CCACCACGCAGGCGAAGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTC 200 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 ||| || |||| |||| ||||||||| ||||| || || ||||||||||| | |||| Sbjct 201 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 260 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || |||||||| || || ||||| | || | | ||||| || | | || || Sbjct 261 -ATGCCTTCCTTGTCTTGGATTTTCTGCTTCACATTGTCGATCGAGTCCGAAGGCTCCAC 319 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC---GCTCGAAT 34398 ||| | ||||||||| ||||| || || || |||||||||||||||||| ||| | || Sbjct 320 GTCGAGCGTGATGGTCTTGCCCGTCAGTGTCTTCACAAAGATCTGCATCTTGGCTTGTAT 379 Query 34399 GGTGCGTG 34406 | || ||| Sbjct 380 GTTGTGTG 387 Score = 91.5 bits (100), Expect = 1e-13 Identities = 117/158 (74%), Gaps = 5/158 (3%) Strand=Plus/Minus Query 34253 GCGAAAATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTT 34311 ||||| || || ||||||||||| | |||| | || |||||||| || || ||||| Sbjct 4369 GCGAAGATCAGACGCTGCTGGTCAGGCGGG-ATGCCTTCCTTGTCTTGGATTTTCTGCTT 4311 Query 34312 TAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGT 34371 | || | | ||||| || | | || ||||| | ||||||||| ||||| || || || Sbjct 4310 CACATTGTCGATCGAGTCCGAAGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGTGT 4251 Query 34372 TTTCACAAAGATCTGCATC---GCTCGAATGGTGCGTG 34406 |||||||||||||||||| ||| | ||| || ||| Sbjct 4250 CTTCACAAAGATCTGCATCTTGGCTTGTATGTTGTGTG 4213 Score = 84.2 bits (92), Expect = 1e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 34253 GCGAAAATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTT 34311 ||||| || || ||||||||||| | |||| | || |||||||| || || ||||| Sbjct 3 GCGAAGATCAGACGCTGCTGGTCAGGCGGG-ATGCCTTCCTTGTCTTGGATTTTCTGCTT 61 Query 34312 TAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGT 34371 | || | | ||||| || | | || ||||| | ||||||||| ||||| || || || Sbjct 62 CACATTGTCGATCGAGTCCGAAGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGTGT 121 Query 34372 TTTCACAAAGATCTGCAT 34389 ||||| ||||||||||| Sbjct 122 CTTCACGAAGATCTGCAT 139 >seq1862 Length=11309 Score = 118 bits (130), Expect = 7e-22 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 34202 TTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATG 34261 ||||| ||||||||||| || ||| ||| |||| || | ||||||||| ||||| || Sbjct 8667 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 8608 Query 34262 AGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCT 34321 || ||||||||||| || | | ||||||||| || || ||||| | || | | Sbjct 8607 AGACGCTGCTGGTCAGGCGGAATTCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 8548 Query 34322 ATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAG 34381 || || | || || ||||| | ||||||||| ||||| || || || ||||||||| Sbjct 8547 ATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAG 8488 Query 34382 ATCTGCAT 34389 |||||||| Sbjct 8487 ATCTGCAT 8480 >seq2313 Length=68569 Score = 100 bits (110), Expect = 2e-16 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | |||||||||||| | || || || ||||| ||||||||||| ||| Sbjct 9410 CCACCACGCAGACGCAGCACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAC 9469 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC 34275 || ||| |||| |||| ||||||||| ||||| || || ||||||||||| Sbjct 9470 AGAGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTC 9522 >seq322 Length=29637 Score = 96.9 bits (106), Expect = 2e-15 Identities = 104/135 (77%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| ||||| | ||||||||||| | ||| || ||||| |||||||||||| | Sbjct 139 CCGCCACGCAGGCGAAGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTC 80 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 ||| || |||| |||| ||||||||| ||||| || || ||||||||||| | |||| Sbjct 79 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 20 Query 34282 CACGCTCTCCTTGTC 34296 | || |||||||| Sbjct 19 -ATGCCTTCCTTGTC 6 >seq1614 Length=15272 Score = 95.1 bits (104), Expect = 8e-15 Identities = 104/136 (76%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 |||||| || || | ||||||||||| | ||| || ||||| |||||||||||| Sbjct 15133 TCCGCCACGAAGACGAAGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCT 15192 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGG 34280 |||| || |||| |||| ||||||||| ||||| || || ||||||||||| | ||| Sbjct 15193 CAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGG 15252 Query 34281 GCACGCTCTCCTTGTC 34296 | | || |||||||| Sbjct 15253 G-ATGCCTTCCTTGTC 15267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323062577706080