Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001707905.1_202016-08- 18] 2,393 sequences; 38,203,779 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1376 199 6e-46 seq905 131 2e-25 seq2310 111 2e-19 >seq1376 Length=62984 Score = 199 bits (220), Expect = 6e-46 Identities = 590/889 (66%), Gaps = 38/889 (4%) Strand=Plus/Plus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 || || |||||| | | || ||| | ||| | |||||||| ||||| ||||| ||| Sbjct 48255 CTATTCCCCATCCAGGAGCACGACGTGTGGCAGATGTACAAGAAGGCGGAGGCCAGCTTC 48314 Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114 ||||| | |||||| | || || | ||||| | || |||| | | | || Sbjct 48315 TGGACTGCGGAAGAGCTGGACTTGGTACACGACCTCAAGGACTGGGGAAACC---TCACA 48371 Query 125115 GAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATC 125174 || | ||||| | || || |||| | |||||||||||||||| | ||||| ||| Sbjct 48372 GACAACGAGCGTCACTTCATCAAGCACGTCTTGGCCTTCTTTGCCGCCAGTGATGGCATC 48431 Query 125175 GTCAACGACAATCTGTTGACACGAT-TCTCTCAA-GAGTTGACCATTCCAGAGGTGTCGT 125232 || ||||| || ||| | | || | | ||| || | | || |||| |||| Sbjct 48432 GTGAACGAGAACCTG--GCTATGAACTTTAGCAATGAAGTACAGGTGCCTGAGGC-TCGT 48488 Query 125233 -GCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTG 125291 |||| ||||| |||||||| ||||||||| | ||||| || ||||||| || Sbjct 48489 TGCTTCTACGGCTTCCAAATTGCCATTGAGAACATCCACTCAGAGGTGTACTCGCTGCTC 48548 Query 125292 ATTGACATGTACATTCGCGATCCGCAACGTAAA-----CACATGCTCTTTAACGCAATCG 125346 ||||||| |||||| || ||| | | | ||| |||| | ||||| | Sbjct 48549 ATTGACACGTACATCAAGGA--CGCTGTGGAGAAGGACCACCTGCTGCGT---GCAATTG 48603 Query 125347 ACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACA 125406 | || | |||| | | || ||||| |||| | | | ||| ||| ||| | Sbjct 48604 AGACCATCCCGTGTGTGACCAAGAAGGCGAGTTGGGCGCTAAGATGGTGCGACC-CGAAA 48662 Query 125407 A-GTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCG 125465 ||| || ||| | || | || ||||||| || || || ||||| |||||||| ||| Sbjct 48663 GTGTCCTCATACCCGGAGCGTCTTCTGGCATTTGCAGCTGTGGAGGGAATCTTCTTCTCG 48722 Query 125466 GG-TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCA 125524 || | |||||| ||||||| |||||||||||||| || |||||||| || |||| Sbjct 48723 GGCTCCTTTTGCT-CCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGAGCTT 48781 Query 125525 CAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGT- 125583 | |||||| | || ||| || || || | ||| |||||||| ||| ||| Sbjct 48782 CTCCAACGAGCTCATTAGTCGTGATGAAGGTATGCACACAGACTTTGCTTGTCTGTTGTA 48841 Query 125584 TTCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAA 125643 ||| | || | | || ||| | ||||| || | | ||| | Sbjct 48842 CTCGAAGCT---GGTGACCAAGCTGCCGGAGCAGCG-------TGTGCACGAGATTATCC 48891 Query 125644 CCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGT-CAGCATGATT 125702 || || |||| ||| ||||| |||||| | | ||| || || || || ||| |||| Sbjct 48892 GTGACGCTGTGAAGATCGAACACGAGTTTGTGAGCGACTCGCTCCCAGTGGAGC-TGATC 48950 Query 125703 GGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTAC 125762 |||||||||| ||| |||||| ||||||| ||||| |||||||| || || ||||| Sbjct 48951 GGCATGAACTCGGCGCTCATGTGCCAGTACATTGAGTTCGTGGCAGACCGCCTGCTGTAT 49010 Query 125763 GAG-TTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCAT 125821 | ||| | | | |||||| ||||||| |||||| || ||||| | ||| || || Sbjct 49011 TCGCTTGGTGTGTC-CAAGATCTACAACGTCAAGAACCCGTTTGACTGGATGGACATGAT 49069 Query 125822 ATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 || ||| |||| ||||| ||||| ||||||||| || |||||||| Sbjct 49070 CTCTCTACAGGGCAAGACTAACTTCTTCGAGAAGCGTGTGGGCGAGTAC 49118 >seq905 Length=95649 Score = 131 bits (144), Expect = 2e-25 Identities = 282/411 (69%), Gaps = 8/411 (2%) Strand=Plus/Plus Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126 || || ||||| ||||| || |||||||||||| | |||| || ||||||| || Sbjct 88572 GGAGACCTGGGACCAGTTTATGGATTCCAGTGGCGTCACTTTGGAGCCAAGTACACGGAT 88631 Query 70127 -TGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAA-TTGCAGACAATCATTGACACTC 70184 ||| | ||||||| | || || || || |||||| |||| || | || ||| Sbjct 88632 ATGCATG-CAGACTACACTGGACAAGGGGTGGATCAACTTGCTGAGG-TGATCCACAAAT 88689 Query 70185 TCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGC 70244 | || || || || || | |||| || ||| | |||||||| |||||| | Sbjct 88690 TGCGCACGAACCCGACCGACCGTCGGATTGTGTTGTCTGCGTGGAATCCGGCAGATCTCA 88749 Query 70245 ACCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTTTTACTCGTACGATGGCAAA 70303 | | ||||| || ||||| |||||| ||||| | |||||||||| | |||||| || Sbjct 88750 ATGAGATGGCGCTGCCACCATGTCACATGTTTTG-TCAGTTTTACGTGGCGGATGGCGAA 88808 Query 70304 TTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATT 70363 ||||| ||| |||||| ||| | || |||||||||||||| || || || ||||| Sbjct 88809 TTGTCGTGCCAAATGTACCAGCGTTCAGCTGACATGGGCCTCGGCGTGCCGTTCAACATC 88868 Query 70364 GCAAGCTATTCTATGTTGACGC-ACATGATTGCTCACATTACCGGCCTGAAAGCGCACGA 70422 || || ||| | | |||||| || || | || || | | || ||||| | ||| Sbjct 88869 GCCAGTTATGCGCTACTGACGCGACTTG-TGGCCCAAGTGGCTGGTTTGAAATCTGGCGA 88927 Query 70423 GTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCC 70473 || | |||| ||||| || || ||||| || | || ||||| ||||| Sbjct 88928 ATTTATCCACATTATTGGTGATGCACACGTATACCTGAACCACATAGAGCC 88978 >seq2310 Length=42645 Score = 111 bits (122), Expect = 2e-19 Identities = 150/206 (73%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 96916 TGGAACCTTGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTG 96975 ||||||| |||||||| || || ||||| || | || ||||||| ||| ||| | Sbjct 40919 TGGAACCGTGGCACGCTGATGTGTTTGAGTTCTTGGATCTGCGCAAGAACCATGG---TA 40863 Query 96976 AAGAG--GCAC-GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGA 97032 | ||| |||| | || | |||||||| ||||| || |||||||| ||| | ||||||| Sbjct 40862 ACGAGCTGCACCGTGCACGTGACTTGTTCTATGCTCTGTGGGTGCCGGATCTATTCATGA 40803 Query 97033 AGCGCGTCAACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGT 97092 |||| || | | | |||| | ||||| | | || ||| || | | |||||||||| Sbjct 40802 AGCGTGTGGAGGCCAATGGCAAGTGGAGTTTGTTCTGTCCCAACGAGGCTCCCGGTCTGT 40743 Query 97093 CCGATTGCTGGGGCGAAGAGTTTGAG 97118 ||| |||||||| || ||||| ||| Sbjct 40742 ACGAGTGCTGGGGAGAGGAGTTCGAG 40717 Score = 93.3 bits (102), Expect = 6e-14 Identities = 126/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 98040 TACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATGGCTGCCGACAGAGGT 98099 |||||||| || |||||||| | ||| || | | || || |||| || | ||| Sbjct 39783 TACAAGACGGTGTGGGAGATCAAGCAGAAGTCGATTCTGGACCTGTCTGCGGATCGTGGT 39724 Query 98100 GTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTCGT 98159 | |||||| |||||||| ||| | || | || | ||||| || || | || Sbjct 39723 GCCTACATCTGTCAGAGTCAGTCGCTGAACATTCACATCGCCGAACCGACAAAAAGCAAG 39664 Query 98160 ATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTA 98215 | || ||||| ||||||||||| ||||| ||||| |||||||||||||||||||| Sbjct 39663 CTTACATCGATGCACTTTTACGCGTGGAAGAAGGGGCTCAAGACGGGCATGTACTA 39608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741037033066680