Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001707905.1_202016-08- 18] 2,393 sequences; 38,203,779 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1232 132 8e-27 >seq1232 Length=136325 Score = 132 bits (146), Expect = 8e-27 Identities = 175/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| |||| |||||| || ||||| || || ||||||||||| || || Sbjct 103757 CGCCAAGCGTCACCGCAAGGTTCTTCGCGACAACATTCAGGGCATCACCAAGCCTGCCAT 103816 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||||||| |||||||| || || ||||| ||||||| || |||| || |||| Sbjct 103817 CCGTCGTCTGGCACGTCGTGGCGGTGTGAAGCGCATCTCTGGCCTGATCTACGAGGAGAC 103876 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || | ||| | ||||| ||| ||| |||| || || | || || || Sbjct 103877 GCGTGGCGTGCTCAAGGTGTTCCTTGAGAACGTGATCCGCGACTCTGTGACGTACACGGA 103936 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| || || || || || | ||||| | || || || | || ||||| || Sbjct 103937 GCACGCTCGCCGCAAAACGGTGACTGCGATGGACGTGGTGTACGCTCTAAAGCGTCAGGG 103996 Query 16672 CCG 16674 ||| Sbjct 103997 CCG 103999 Score = 132 bits (146), Expect = 8e-27 Identities = 175/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| |||| |||||| || ||||| || || ||||||||||| || || Sbjct 106724 CGCCAAGCGTCACCGCAAGGTTCTTCGCGACAACATTCAGGGCATCACCAAGCCTGCCAT 106665 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||||||| |||||||| || || ||||| ||||||| || |||| || |||| Sbjct 106664 CCGTCGTCTGGCACGTCGTGGCGGTGTGAAGCGCATCTCTGGCCTGATCTACGAGGAGAC 106605 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || | ||| | ||||| ||| ||| |||| || || | || || || Sbjct 106604 GCGTGGCGTGCTCAAGGTGTTCCTTGAGAACGTGATCCGCGACTCTGTGACGTACACGGA 106545 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| || || || || || | ||||| | || || || | || ||||| || Sbjct 106544 GCACGCTCGCCGCAAAACGGTGACTGCGATGGACGTGGTGTACGCTCTAAAGCGTCAGGG 106485 Query 16672 CCG 16674 ||| Sbjct 106484 CCG 106482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073012063349