Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001707905.1_202016-08- 18] 2,393 sequences; 38,203,779 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1376 199 7e-46 seq769 152 9e-32 seq704 122 2e-22 seq275 122 2e-22 seq180 114 2e-20 seq1614 98.7 2e-15 seq1924 95.1 2e-14 seq322 91.5 3e-13 >seq1376 Length=62984 Score = 199 bits (220), Expect = 7e-46 Identities = 616/935 (66%), Gaps = 25/935 (3%) Strand=Plus/Minus Query 9893 TTAGAAGTCTGCGTCAATTGCAAACACGTTGTCGTCGGCATTCATG---ACGCCCGCCTT 9949 ||| ||||| ||||||| || ||||| | || ||||| | ||||| ||||| Sbjct 49181 TTAAAAGTCGGCGTCAAGTGTGAACACCTGCTCCTCGGCCGCAACACCCACGCCTGCCTT 49122 Query 9950 CTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTCGAGGGAAATGAGCTC 10009 |||||| || || |||||||||||| | |||||||| || || || | || Sbjct 49121 GGAGTACTCGCCCACACGCTTCTCGAAGAAGTTAGTCTTGCCCTGTAGAGAGATCATGTC 49062 Query 10010 CATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACCGAGTGCTGTGAAAAT 10069 ||| ||||||| ||||||| | || | ||||| ||| || | | | Sbjct 49061 CATCCAGTCAAACGGGTTCTTGACGTTGTAGATCTTGGACACACCAAGCGAATACAGCAG 49002 Query 10070 GCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTTCATGCCAATCATGCG 10129 |||||| ||||||||||| |||||||||| ||| || ||||||||||||| |||| || Sbjct 49001 GCGGTCTGCCACGAACTCAATGTACTGGCACATGAGCGCCGAGTTCATGCCGATCA-GCT 48943 Query 10130 GCAG-GGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGCTTCCTCGACGATGC 10188 || |||| | ||||| | || || | |||| | || || || || || | Sbjct 48942 CCACTGGGAGCGAGTCGCTCACAAACTCGTGTTCGATCTTCACAGCGTCACGGATAAT-C 48884 Query 10189 TCTTTACCACG-TCAAGGGACAGCTTGTTCTCGAGCTTCGAATACAGGAGCTCTCCAAAC 10247 || | |||| | | ||||||| || | |||||||| |||| || |||| Sbjct 48883 TCGTGCACACGCTGCTCCGGCAGCTTGGTCACCAGCTTCGAGTACAACAGACAAGCAAAG 48824 Query 10248 TGCTG-GTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAAACCCAGACCGGGCAT 10306 | ||| ||| | || || || || || |||| ||||||||| || | |||||| ||||| Sbjct 48823 T-CTGTGTGCATACCTTCATCACGACTAATGAGCTCGTTGGAGAAGCTCAGACCAGGCAT 48765 Query 10307 GAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGGAGAACAGAAGA--CCC 10364 ||| || || || |||||||| |||| ||| || || || ||||| ||||| ||| Sbjct 48764 GAGACCACGCTTCTTGAGCCAGAAGATGGAGCAAAAGGAGCCCGAGAA--GAAGATTCCC 48707 Query 10365 TCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGGAG----CGGTCGCG-CGAAAAGT 10419 ||||| | | || | || ||||| | | | ||| | ||| | || | | Sbjct 48706 TCCACAGCTGCAAATGCCAGAAGACGCTCCGGGTATGAGGACACTTTCGGGTCGCACCAT 48647 Query 10420 ATTTCGAGGCCCACGCTGCCTTCTTTCCCACGGCAGGGATCGTCTCGATAGCCTCGAAG- 10478 || | | || || | |||||||| ||| ||||| ||||| || || || || Sbjct 48646 CTTA-GCGCCCAACTC-GCCTTCTTGGTCACACACGGGATGGTCTCAATTGCA-CGCAGC 48590 Query 10479 AGCTTGTTACGCTCGGTCTCGTCCTCAATAAGAGCATCAAGGAGCAGGGAGTATTGCTCG 10538 || | || ||| |||||| || | |||| |||||| ||||| ||| Sbjct 48589 AGGTGGTCCTTCTCCACAGCGTCCTTGATGTACGTGTCAATGAGCAGCGAGTACACCTCT 48530 Query 10539 CTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAACATACGTGCCGAGGGGTCCGTG 10598 ||||| | ||||| || ||| | ||||||| ||| ||| || || Sbjct 48529 GAGTGGATGTTCTCAATGGCAATTTGGAAGCCGTAGAAGCAACGAGCCTCAGGCACCTGT 48470 Query 10599 ACTTCCTCGGCAAAGTTGTTGTTCAGGTTCTCCATCACCATGCCATCGCTGCCTGCAAAG 10658 ||||| | | |||||| | ||||||||| |||| |||||||| ||| | |||||| Sbjct 48469 ACTTCATTGCTAAAGTTCATAGCCAGGTTCTCGTTCACGATGCCATCACTGGCGGCAAAG 48410 Query 10659 AAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATCGTTCAGTTTTTCACGCCAGTCT 10718 ||| | | || ||||||||||||||| ||||| | || | || ||| | |||||| Sbjct 48409 AAGGCCAAGACGTGCTTGATGAAGTGACGCTCGTTGTCTGTGAGGTTT---CCCCAGTCC 48353 Query 10719 ACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCAGAAAGTGGCAACGGCCTTCTTG 10778 | || || | | | ||| ||| | |||||||| |||| | ||||||||| Sbjct 48352 TTGAGGTCGTGTACCAAGTCCAGCTCTTCCGCAGTCCAGAAGCTGGCCTCCGCCTTCTTG 48293 Query 10779 TACATCTGGAAAATGTCGGGGTACCGGATGGGGAA 10813 |||||||| | | |||| | | | |||||||||| Sbjct 48292 TACATCTGCCACACGTCGTGCTCCTGGATGGGGAA 48258 >seq769 Length=53168 Score = 152 bits (168), Expect = 9e-32 Identities = 437/664 (66%), Gaps = 16/664 (2%) Strand=Plus/Plus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 |||||||| ||||| ||||| ||| ||| ||||| | ||||| || |||||||| Sbjct 14497 CGCCACTGAATGTAGGCGTTGGCAGTCTCGTCGAGGTGCTCTTCAATGTGATGGAAAGCG 14556 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTCGGT 225100 ||||| || ||||| || | |||||| || |||||||| || | || || ||| Sbjct 14557 TGCTGAGCGACGTAAGCGAAACGCATGGAAGGGTGCTTCCATACCGTACCGACGGTGGGT 14616 Query 225101 TGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAATC 225160 | |||| || || || | |||||| ||||| | ||| || ||||| |||||||||| | Sbjct 14617 TCAACCTCACCCGTCAGCATCTTGATCAGCGTCGACTTACCGGCACCGTTGGGGCCAAGC 14676 Query 225161 ACGCCAATCCGGGATGACATTGCA-ACCTG--CGAGTTCACGTTGCT-GAAGATCT--CA 225214 ||| |||| || ||||||| || || | ||| | |||| | || | | | || Sbjct 14677 ACGGCAATACGCGATGACAGAGCGCACGTCACCGAAATGTTGTTGATCGACGGTTTGTCA 14736 Query 225215 GGGCCAGTTTGGTAAGCAAAGGCCACGCCACGCAGCTTCATGATGGCACGGTCCTTGGAA 225274 |||||| |||| ||| | ||| ||||||| ||||| Sbjct 14737 CGGCCAG---GGTACTGGTAGGTACAGTTGGTCAGACGAATGATGGGCTTACCCTTGTTC 14793 Query 225275 GTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTCCTTCAGG 225334 | || | | ||||| || ||||| |||||| | || || ||| ||| Sbjct 14794 TTGATGTCAGCAAGGAAACCAGGCTCCGGGAACGTGAATCTGAAGGTAGCAGCCTCCAGC 14853 Query 225335 TCGTAGTAAGATGCAGCCTCGGG--TCGCTTTGCCACGAAAGCAGACAGGTTTCCGAGGT 225392 || ||||| | ||||| || || | | ||||||| || ||||| || || Sbjct 14854 TCATAGTAGGCCTTGGCCTCAGGCTTCACCT--CCACGAACTTGGAAAGGTTGCCCTTGT 14911 Query 225393 GCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAATTGCCGAGCACACTGCGTCAAGGA 225452 || | ||||| || ||| |||| |||| || | || || | |||||||| Sbjct 14912 AGATCTTCAGCTTACGGGTCT---CGTAGTGAATGATGTTAGTACAGACCGTGTCAAGGA 14968 Query 225453 AGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAGGTGCGTGA 225512 ||| |||||||||||||| |||||| || |||||||| |||| | | |||| | Sbjct 14969 AGCTGGAGTCGTGGGACACCATGATGCTCGTCACGTTCGGCAGGTTCGTCAGGTAGTTCT 15028 Query 225513 TGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGGATGT 225572 |||||| || ||||| |||| |||| |||||| || || || || |||||||| |||| Sbjct 15029 CGAGCCACGCAACGTTCTTGACATCCAAGTGGTTCGTCGGCTCATCAAGAAGCAGAATGT 15088 Query 225573 CAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGACAGGG 225632 | || | || || || || | || ||| ||||| ||||| || || || |||| Sbjct 15089 CGGCCTTCTGAAGCATAGCACGGGCCAGCTCCAGTTTCATCTTCCAACCACCCGAAAGGG 15148 Query 225633 AGCC 225636 ||| Sbjct 15149 TGCC 15152 Score = 113 bits (124), Expect = 8e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 224449 GTGAGAAATAACTACTACACCGCCGCCGAATGACTCAAGGGCGGATGAAAGCGCGCCAAG 224508 ||||| ||| | || ||||| ||| ||| || | || | | ||| || ||||| Sbjct 13953 GTGAGTAATCATAACGACACCACCGTTGAACTCCTTGATAGCCGTAGCAAGGGCACCAAG 14012 Query 224509 CGACTCGCGGTCAAGGAAGTTCGTCGGCTCATCCAGGATGATAACGTGGGGGCACTGCCA 224568 || |||||||||||| ||||||| |||||||| || | | | ||| ||| | |||| Sbjct 14013 AGAGTCGCGGTCAAGGTAGTTCGTGGGCTCATCAAGCACCAGGATGTGCGGGTTCAGCCA 14072 Query 224569 CAGGGCTGCACCAACCACCAGCTTCACCTTCTGACCGCCAGAGAGGCCGCGGATCCGCGA 224628 || ||| ||||| | ||| | ||||||||||||||| || || || || || || ||||| Sbjct 14073 CATGGCAGCACCCAGCACGACCTTCACCTTCTGACCACCGGACAGACCACGCATGCGCGA 14132 Query 224629 GTGAGTCGTGAATTCGG 224645 ||| || ||| |||| Sbjct 14133 GTGCGTACCGAACTCGG 14149 >seq704 Length=142347 Score = 122 bits (134), Expect = 2e-22 Identities = 276/406 (68%), Gaps = 12/406 (3%) Strand=Plus/Plus Query 268394 CCACGTAGAGGGCTCTCGTGGTTGAAGAGGATGCCGTTGCAC-GCGAACATGCCATATGC 268452 ||||| | || |||||||||||||| ||||| ||||| ||| |||||||| || || || Sbjct 135068 CCACGCCGTGGACTCTCGTGGTTGAACAGGATTCCGTT-CACAGCGAACATTCCGTAAGC 135126 Query 268453 CTCACGGTAGTTCACGACCGTCCAGTATGCAAACATCTTTGCAACTGCGTACGGAGAACG 268512 || |||| || || || |||| | ||||| ||| |||| | | ||||| || || Sbjct 135127 TTCGCGGTGATTTACCACACTCCAAAAGGCAAATTGCTTCGCAATTCCATACGGCGAGCG 135186 Query 268513 TGGATGGAAGGGCG--TCGTGATCTTTTGAGGGATTTCTCGGACTTTGCCAAAGAGCTCG 268570 ||| ||||| || | || | ||| || || | |||| || || || | | || Sbjct 135187 TGGGTGGAATGGTGTATCTTCATC--CTGCGGCGTGGCTCGTACCTTCCCGTACAATTCA 135244 Query 268571 GAGGTCGATGCTTGGTAGAACTTTGTTGTTTTTTCGAGACCGCAGATTCGGATTGCCTCG 268630 || || || ||||||||| | || || ||| || ||||| | || | | |||| Sbjct 135245 CTTGTGGAGGCCTGGTAGAACCTAGTGGTACGTTCAAGTCCGCAAGTGCG--TAGACTCG 135302 Query 268631 --AGCAAACGAAGAGTTCCCATGCCATCCACGTCCGCTGTATACTCCGGCATCTCGAATG 268688 |||| || | |||| | ||||| || || || ||||| | || || || | Sbjct 135303 TAAGCAGCCGCAACACACCCAAAGCGTCCACATCGGCCGTGTACTCGGCCAGTTCAAAAG 135362 Query 268689 ACACCTGGACATGGCTCTGGGCGCCCAGGTTATAAACCTCATCCGGTTTGACCTGCTGCA 268748 |||| | |||||| | || |||||||| || |||||||||||| || | | || Sbjct 135363 ACACTTTCACATGGGACATTGCACCCAGGTTGTACACCTCATCCGGTCGCACTTTCGCCA 135422 Query 268749 CGATCT-TCACGAGGTTCGTTGAGTCGGTGAGGTCTCCGTAGTGCA 268793 | |||| ||| | || | | |||||||||||||| ||||||| Sbjct 135423 CAATCTGGCAC-ATATTGGACGCATCGGTGAGGTCTCCATAGTGCA 135467 >seq275 Length=4371 Score = 122 bits (134), Expect = 2e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | |||| ||| || || ||||| || |||||||| || ||| Sbjct 141 CCACCACGCAGGCGAAGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTC 200 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || || | || ||||| || || Sbjct 201 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 260 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||||||||||||||| || || ||| || ||||| | ||| | | || || Sbjct 261 ATGCCTTCCTTGTCTTGGATTTTCTGCTTCACATTGTCGATCGAGTCCGAAGGCTCCACG 320 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || ||||| || ||||| || || |||||||| Sbjct 321 TCGAGCGTGATGGTCTTGCCCGTCAGTGTCTTCACAAAGATCTGCAT 367 Score = 84.2 bits (92), Expect = 4e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 68323 CGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCT 68382 ||||||| || || | || ||||| || || ||||||||||||||||| || || || Sbjct 1 CGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGGATTTTCTGCT 60 Query 68383 TGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGG 68442 | || ||||| | ||| | | || || || | |||||||| || ||||| || | Sbjct 61 TCACATTGTCGATCGAGTCCGAAGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGTG 120 Query 68443 TCTTGACGAATATCTGCAT 68461 |||| ||||| |||||||| Sbjct 121 TCTTCACGAAGATCTGCAT 139 >seq180 Length=55214 Score = 114 bits (126), Expect = 2e-20 Identities = 99/123 (80%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 224501 GCGCCAAGCGACTCGCGGTCAAGGAAGTTCGTCGGCTCATCCAGGATGATAACGTGGGGG 224560 ||||| |||| ||||||| ||| | ||||||||||||||||| | | | ||| ||| Sbjct 20899 GCGCCCAGCGCAGCGCGGTCCAGGTAATTCGTCGGCTCATCCAGCACCAGCAAGTGCGGG 20840 Query 224561 CACTGCCACAGGGCTGCACCAACCACCAGCTTCACCTTCTGACCGCCAGAGAGGCCGCGG 224620 || | ||||| ||| ||| ||| ||| ||||||||||||||||| || ||||| |||||| Sbjct 20839 CAGTTCCACATGGCAGCAGCAATCACAAGCTTCACCTTCTGACCACCCGAGAGACCGCGG 20780 Query 224621 ATC 224623 ||| Sbjct 20779 ATC 20777 >seq1614 Length=15272 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 68228 TTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATA 68287 ||| ||||| || ||||| || | |||| ||| || || ||||| || |||||||| || Sbjct 15127 TTAGTTTCCGCCACGAAGACGAAGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTA 15186 Query 68288 ATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTC 68347 ||| || || | || || || | |||||| |||||||| || || | || ||||| Sbjct 15187 GTCGCTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTC 15246 Query 68348 GGGTGGAATGCCTTCCTTGTCTTG 68371 || || ||||||||||||||||| Sbjct 15247 AGGCGGGATGCCTTCCTTGTCTTG 15270 >seq1924 Length=6525 Score = 95.1 bits (104), Expect = 2e-14 Identities = 60/65 (92%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||| |||||||||||| |||||||||| ||||||| ||||||||||||||||||||| Sbjct 2525 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGC 2466 Query 84516 CCCAC 84520 ||||| Sbjct 2465 CCCAC 2461 >seq322 Length=29637 Score = 91.5 bits (100), Expect = 3e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 68232 TTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCG 68291 || || || || ||||| | |||| ||| || || ||||| || |||||||| || ||| Sbjct 142 TTACCGCCACGCAGGCGAAGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCG 83 Query 68292 GAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGT 68351 || || | || || || | |||||| |||||||| || || | || ||||| || Sbjct 82 CTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGC 23 Query 68352 GGAATGCCTTCCTTGTCTTG 68371 || ||||||||||||||||| Sbjct 22 GGGATGCCTTCCTTGTCTTG 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921594831969960