Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001707905.1_202016-08- 18] 2,393 sequences; 38,203,779 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq275 131 4e-25 seq1862 120 7e-22 >seq275 Length=4371 Score = 131 bits (144), Expect = 4e-25 Identities = 169/232 (73%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || | ||| || || |||| || || || ||||| || |||| Sbjct 137 CATG-CCACCACGCAGGCGAAGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGT 195 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 || |||||||| ||||| || | || || || ||||||||||||||||| || | Sbjct 196 CGCTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAG 255 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||| ||||| || || ||||||||| ||||| || || || || || | | Sbjct 256 GCGGGATGCCTTCCTTGTCTTGGATTTTCTGCTTCACATTGTCGATCGAGTCCGAAGGCT 315 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || ||||||||||| ||||| || ||||| ||||| || || |||||||| Sbjct 316 CCACGTCGAGCGTGATGGTCTTGCCCGTCAGTGTCTTCACAAAGATCTGCAT 367 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 288337 GCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTC 288396 ||||||||||||||||| || | ||||| ||||| || || ||||||||| ||| Sbjct 3 GCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGGATTTTCTGCTTC 62 Query 288397 ACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456 || || || || || || | || || ||||||||||| ||||| || ||||| ||| Sbjct 63 ACATTGTCGATCGAGTCCGAAGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGTGTC 122 Query 288457 TTGACGAATATCTGCAT 288473 || ||||| |||||||| Sbjct 123 TTCACGAAGATCTGCAT 139 Score = 95.1 bits (104), Expect = 3e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 288337 GCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTC 288396 ||||||||||||||||| || | ||||| ||||| || || ||||||||| ||| Sbjct 4369 GCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGGATTTTCTGCTTC 4310 Query 288397 ACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456 || || || || || || | || || ||||||||||| ||||| || ||||| ||| Sbjct 4309 ACATTGTCGATCGAGTCCGAAGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGTGTC 4250 Query 288457 TTGACGAATATCTGCAT 288473 || || || |||||||| Sbjct 4249 TTCACAAAGATCTGCAT 4233 >seq1862 Length=11309 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || ||||| || ||||| | ||||||||| ||||| || | || || || ||||||||| Sbjct 8667 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 8608 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 |||||||| || | || ||||| || || |||||||||||| || || || || Sbjct 8607 AGACGCTGCTGGTCAGGCGGAATTCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 8548 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAAT 288465 || || || || || ||||||||||| ||||| || ||||| ||||| || || Sbjct 8547 ATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAG 8488 Query 288466 ATCTGCATTAT 288476 |||||||| || Sbjct 8487 ATCTGCATGAT 8477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179618231427454