Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001707905.1_202016-08- 18] 2,393 sequences; 38,203,779 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq1862 122 9e-23 seq275 114 1e-20 seq2313 89.7 6e-13 >seq1862 Length=11309 Score = 122 bits (134), Expect = 9e-23 Identities = 143/191 (75%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078 |||| || || ||||| || | || || || |||| || |||||||| || ||||| | Sbjct 8669 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 8610 Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 42138 | || ||||||||||| | || | | |||||||||| |||||| || |||| | | | Sbjct 8609 TCAGACGCTGCTGGTCAGGCGGAATTCCCTCCTTGTCCTGGATTTTCTGCTTGA-CATTG 8551 Query 42139 CCACCG-TGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 || | |||| || ||||| |||| ||||||||| |||||||| || ||||| ||| Sbjct 8550 TCAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACA 8491 Query 42198 AAGATTTGCAT 42208 ||||| ||||| Sbjct 8490 AAGATCTGCAT 8480 >seq275 Length=4371 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 ||||| || | ||| |||||| || || ||||| || ||| || || |||| || Sbjct 158 CACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTC 217 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 |||||||| || ||||| || || ||||||||||| | || | || |||||||| Sbjct 218 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTG 277 Query 42119 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178 |||||| || || | | | | || ||| | ||||| |||| ||||||||| || Sbjct 278 GATTTTCTGCTTCACATTGTCGATCGAGTCCGAAGGCTCCACGTCGAGCGTGATGGTCTT 337 Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 |||||| || ||||| |||||||| ||||| || Sbjct 338 GCCCGTCAGTGTCTTCACAAAGATCTGCATCTT 370 Score = 82.4 bits (90), Expect = 8e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 42072 GCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTG 42131 ||||| || || ||||||||||| | || | || |||||||| |||||| || || Sbjct 4369 GCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGGATTTTCTGCTTC 4310 Query 42132 AGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTC 42191 | | | | || ||| | ||||| |||| ||||||||| |||||||| || ||| Sbjct 4309 ACATTGTCGATCGAGTCCGAAGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGTGTC 4250 Query 42192 TTTACAAAGATTTGCATTTT 42211 || |||||||| ||||| || Sbjct 4249 TTCACAAAGATCTGCATCTT 4230 >seq2313 Length=68569 Score = 89.7 bits (98), Expect = 6e-13 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| ||||| || | ||||||||||| || || ||||| || | |||||| || | Sbjct 9421 ACGCAGCACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGACAGAGTGCGGCC 9480 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 42094 ||| || |||||||| |||||||| || || ||||||||||| Sbjct 9481 GTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTC 9522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543196551147120