Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001707905.1_202016-08- 18] 2,393 sequences; 38,203,779 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq275 109 5e-19 seq1862 107 2e-18 seq322 91.5 1e-13 seq1614 86.0 6e-12 >seq275 Length=4371 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || |||| | |||||| || |||| || || || || || |||||||| || Sbjct 141 CCACCACGCAGGCGAAGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTC 200 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| |||| || |||||||||||||| | || || ||||||||||| || || Sbjct 201 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 260 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || ||||| || ||||| ||||| ||||| ||| || | | || | ||||| Sbjct 261 ATGCCTTCCTTGTCTTGGATTTTCTGCTTCACATTGTCGATCGAGTCCGAAGGCTCCACG 320 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | || | ||||||||| |||| || || || || || ||||| || Sbjct 321 TCGAGCGTGATGGTCTTGCCCGTCAGTGTCTTCACAAAGATCTGCATCTT 370 >seq1862 Length=11309 Score = 107 bits (118), Expect = 2e-18 Identities = 140/190 (74%), Gaps = 4/190 (2%) Strand=Plus/Minus Query 64256 TTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATG 64315 || || |||||||| || | || ||||| |||| || |||||||||||||| | || Sbjct 8667 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 8608 Query 64316 AGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCC 64375 || ||||||||||| || |||||||| || || || || ||||| ||||| ||| || Sbjct 8607 AGACGCTGCTGGTCAGGCGGAATTCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 8548 Query 64376 A--CTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGA 64433 | |||| | |||| ||||| || | || | ||||||||| |||| || || || | Sbjct 8547 ATGCTGT-CCGACGGC-TCCACGTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAA 8490 Query 64434 AAATTTGCAT 64443 | || ||||| Sbjct 8489 AGATCTGCAT 8480 >seq322 Length=29637 Score = 91.5 bits (100), Expect = 1e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| |||| | |||||| || |||| || || || || || |||||||| || Sbjct 140 ACCGCCACGCAGGCGAAGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCT 81 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| |||| || |||||||||||||| | || || ||||||||||| || || Sbjct 80 CAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGG 21 Query 64336 AATTCCTTCTTTTTCTTG 64353 || ||||| || ||||| Sbjct 20 GATGCCTTCCTTGTCTTG 3 >seq1614 Length=15272 Score = 86.0 bits (94), Expect = 6e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 ||||| || | | |||||| || |||| || || || || || |||||||| || Sbjct 15134 CCGCCACGAAGACGAAGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTC 15193 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| |||| || |||||||||||||| | || || ||||||||||| || || Sbjct 15194 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 15253 Query 64337 ATTCCTTCTTTTTCTTG 64353 || ||||| || ||||| Sbjct 15254 ATGCCTTCCTTGTCTTG 15270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499629854374920