Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001707905.1_202016-08- 18] 2,393 sequences; 38,203,779 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1376 120 3e-22 seq275 120 3e-22 seq1862 107 2e-18 seq2310 93.3 4e-14 seq1614 84.2 2e-11 seq322 84.2 2e-11 >seq1376 Length=62984 Score = 120 bits (132), Expect = 3e-22 Identities = 282/423 (67%), Gaps = 11/423 (3%) Strand=Plus/Plus Query 52419 GTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGC 52478 || ||||| | || || || ||| |||| | ||||||| | | || | | || Sbjct 48702 GTGGAGGGAATCTTCTTCTCGGGCTCCTTTTGCTCCATCTTCTGGCTCAAGAAGCGTGGT 48761 Query 52479 ATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACG 52538 | ||||| || |||| ||| ||||||| | || || || ||||| ||||||| Sbjct 48762 CTCATGCCTGGTCTGAGCTTCTCCAACGAGCTCATTAGTCGTGATGAAGGTATGCACACA 48821 Query 52539 GACTTTGCGTGCCTCTACTACAAGACGCGCGTGACCGAAAAATTGGATTCGGA----CAC 52594 |||||||| || || | ||| || || |||||| || || |||| | Sbjct 48822 GACTTTGCTTGTCTGTTGTACTCGAAGCTGGTGACC---AAGCTGC---CGGAGCAGCGT 48875 Query 52595 GATCCTGAGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCT 52654 | | ||| || || || || ||| |||||| | |||||| | | | | |||| Sbjct 48876 GTGCACGAG-ATTATCCGTGACGCTGTGAAGATCGAACACGAGTTTGTGAGCGACTCGCT 48934 Query 52655 GCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGC 52714 || || |||||| | ||||||||| || | ||||||| ||||||| ||||| ||||| Sbjct 48935 CCCAGTGGAGCTGATCGGCATGAACTCGGCGCTCATGTGCCAGTACATTGAGTTCGTGGC 48994 Query 52715 GGATCGTCTGTTGGTGCAGCTCGGGCAGCCAAAGTACTTCAACGCTCGCAATCCGTTTGA 52774 || || ||| || ||| || | | ||| || ||||| || |||||||| Sbjct 48995 AGACCGCCTGCTGTATTCGCTTGGTGTGTCCAAGATCTACAACGTCAAGAACCCGTTTGA 49054 Query 52775 GTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGA 52834 | ||| ||| || || || |||||||||| ||||| ||||||||||| || ||||| Sbjct 49055 CTGGATGGACATGATCTCTCTACAGGGCAAGACTAACTTCTTCGAGAAGCGTGTGGGCGA 49114 Query 52835 GTA 52837 ||| Sbjct 49115 GTA 49117 >seq275 Length=4371 Score = 120 bits (132), Expect = 3e-22 Identities = 145/195 (74%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||||||| || || |||||| || || || |||| Sbjct 174 GACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCG 233 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| |||||||| ||||| || || || ||||| ||||| |||||| || || | | Sbjct 234 AAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGGATTTTCTGCTTCACA 293 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | | ||| | | |||||| |||| ||| | || || || ||||| || || Sbjct 294 TTG-TCGATCGAGTCCGAAGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGTGTCTT 352 Query 138600 TACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 353 CACAAAGATCTGCAT 367 >seq1862 Length=11309 Score = 107 bits (118), Expect = 2e-18 Identities = 148/204 (73%), Gaps = 5/204 (2%) Strand=Plus/Minus Query 138416 TGTTTGACTC---CTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTT 138472 |||||| ||| ||| || ||||||||||| | || || ||||||||| || | Sbjct 8681 TGTTTGTCTCACCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCT 8622 Query 138473 TACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTT 138532 | |||| |||| |||||||| ||||| || || || || || ||||| |||||| | Sbjct 8621 TGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGAATTCCCTCCTTGTCCTGGATTTTCT 8562 Query 138533 GTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTC 138591 | || | |||| || | | |||| | || |||||| |||| ||| | || || || ||| Sbjct 8561 GCTTGACATTG-TCAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTC 8503 Query 138592 AGAGTTTTTACAAAAATCTGCATG 138615 || || || ||||| ||||||||| Sbjct 8502 AGGGTCTTCACAAAGATCTGCATG 8479 >seq2310 Length=42645 Score = 93.3 bits (102), Expect = 4e-14 Identities = 478/750 (64%), Gaps = 23/750 (3%) Strand=Plus/Plus Query 153809 GCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGC 153868 |||||| || | |||||| ||| |||| ||| ||||| || || |||| ||| Sbjct 40684 GCGGCCTTCACGCTCGTACTTCTCAAACAGCGTCTCGAACTCCTCTCCCCAGCACTCGTA 40743 Query 153869 GAGGCCGGGACACTGATGCGGACACATCAGCGACCACATATCGTCGGCGTTGACGCGTCG 153928 || |||||| || | ||||| | || |||| | | | ||| | || || Sbjct 40744 CAGACCGGGAGCCTCGTTGGGACAGAACAAACTCCACTTGCCATTGGCCTCCACACGCTT 40803 Query 153929 CATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCT--TGCAATCCTCC 153986 |||||| |||||||||||||| || || || | | ||| || || |||| ||| Sbjct 40804 CATGAATAGATCCGGCACCCACAGAGCATAGAACAAGTCACGTGCACGGTGCAG--CTC- 40860 Query 153987 GCGCCCATG----TTGCGTTTCAGATTGA-GCACGCTATAGATGTCGGCGTGCCAGGGTT 154041 | ||||| ||||| ||||| | | || | | | | || |||||||| |||| Sbjct 40861 GTTACCATGGTTCTTGCG---CAGATCCAAGAACTCAA-ACACATCAGCGTGCCACGGTT 40916 Query 154042 CAATGTAGACGGCCAGGGCACCTTTACGCTT---TCCGCCCTGATCGACGTGGCGCACCA 154098 | | || | || | | || || || || ||| ||||| || |||| || || Sbjct 40917 CCAGATAAATCGCAAATGATCCCTTGCGTTTACCTCCACCCTGGTCCACGTAACGTGCCG 40976 Query 154099 TATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCGTTGGTCGAATTGA 154158 ||| ||| || || |||| |||||| | |||| | | | |||||| || || Sbjct 40977 TATCGTTAAACACTCGCAGCATGGGGATGATGCCGTTGGACGAGCCGTTCGTGCCGCGGA 41036 Query 154159 TCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGCCAATGCCGCCGCCGTACTTTG 154218 | | |||| || || | | |||| | | ||||||||| || | |||| | Sbjct 41037 TGTAGCTGTTAGTAGCTCGGATGTTGTGCATACTGATGCCAATGCCTCCTGCCCACTTGG 41096 Query 154219 ATATGGCAGCGCAGTCGCCCAGCGTCCTGTAGATGCCGTCGATGCTATCGTCGCGGACGC 154278 | ||| || || | ||| || || ||||| || || || || | | | Sbjct 41097 AGATGCACGCACACTGTTTCAGAGTGTCATAAATGCCTTCAATAGAGTCATCCTGCATGG 41156 Query 154279 CGAGCAAGAAACACGAACACATTTGCGGAATGCGCGTTCCCGCCGAAAAGAGGGTGGGAC 154338 | | |||||| |||||| ||| ||| ||| | || || || || || ||||| Sbjct 41157 CCAACAAGAAGCACGAAGACAATTGTGGACGTGGGGTACCAGCATTGAACAGCGTGGGGG 41216 Query 154339 TCGCGTGCGTAAACAGTTTTTGGCTCATCATGCGGTACGTTTCGA-TGGCGTCTTCGATA 154397 | ||||| || || | |||||| ||| | ||| || || | || || ||| ||| Sbjct 41217 TGGCGTGGGTGAAGAATTTTTGCGACATGAGTTCGTAAGTCTCAAGTGCCGCCTT-GATG 41275 Query 154398 TCATCGCC--GTGAATGCCGAGCGCGACGCGCATGAGCATGTGCTGCGGACGTTCGGCGA 154455 | ||| | ||| ||||| || || |||||||||| ||| ||||| |||||||| | | Sbjct 41276 T--TCGTCTTGTGGATGCCTAGAGCCACGCGCATGATCATCTGCTGGGGACGTTCCACCA 41333 Query 154456 CTCTATTGTCAATCTTCAAGAGATATCCATTTTCGAGGGTTTTGTAACCGAAATACTTGT 154515 || | || | ||||||||||| | || || || || | || ||||| | || Sbjct 41334 CTTTGCCGTGGACACGGAAGAGATATCCCCTCTCCAGTGTCTTAAAGCCAAAATAATCGT 41393 Query 154516 ATTCAAAATCTAGCTCATGAGCGATGGCCG 154545 ||||||| ||| | ||||| ||||||| Sbjct 41394 ATTCAAAGTCTCGGTCATGGATAATGGCCG 41423 >seq1614 Length=15272 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||||||| || || |||||| || || || |||| Sbjct 15167 GACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCG 15226 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTC 138521 |||| |||||||| ||||| || || || ||||| ||||| Sbjct 15227 AAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTC 15267 >seq322 Length=29637 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||||||| || || |||||| || || || |||| Sbjct 106 GACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCG 47 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTC 138521 |||| |||||||| ||||| || || || ||||| ||||| Sbjct 46 AAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTC 6 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496247555550960