Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001707905.1_202016-08- 18] 2,393 sequences; 38,203,779 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq275 134 1e-26 seq1862 107 2e-18 seq1376 84.2 2e-11 >seq275 Length=4371 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | |||||||| || || || ||||| |||| | Sbjct 141 CCACCACGCAGGCGAAGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTC 200 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||||| || || ||||| || || ||| |||||| |||||||| || || || Sbjct 201 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 260 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||| |||||||| |||||||||||| | | |||| | ||||| | ||| || Sbjct 261 ATGCCTTCCTTGTCTTGGATTTTCTGCTTCACATTGTCGATCGAGTCCGAAGGCTCCACG 320 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | || ||||| ||||| || || ||||| |||||||| Sbjct 321 TCGAGCGTGATGGTCTTGCCCGTCAGTGTCTTCACAAAGATCTGCAT 367 Score = 89.7 bits (98), Expect = 5e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||||| |||||||| || || || ||||| |||||||| |||||||||||| Sbjct 4369 GCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGGATTTTCTGCTTC 4310 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| | ||||| | ||| || |||| || | || ||||| ||||| || Sbjct 4309 ACATTGTCGATCGAGTCCGAAGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGTGTC 4250 Query 127097 TTTACAAAAATCTGCAT 127113 || ||||| |||||||| Sbjct 4249 TTCACAAAGATCTGCAT 4233 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||||| |||||||| || || || ||||| |||||||| |||||||||||| Sbjct 3 GCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGGATTTTCTGCTTC 62 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| | ||||| | ||| || |||| || | || ||||| ||||| || Sbjct 63 ACATTGTCGATCGAGTCCGAAGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGTGTC 122 Query 127097 TTTACAAAAATCTGCATG 127114 || || || ||||||||| Sbjct 123 TTCACGAAGATCTGCATG 140 >seq1862 Length=11309 Score = 107 bits (118), Expect = 2e-18 Identities = 137/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| || | |||||| || || ||||| || || ||| ||||| Sbjct 8667 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 8608 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 | |||||||| || || || || |||||||||||| |||||||||||||| | || Sbjct 8607 AGACGCTGCTGGTCAGGCGGAATTCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 8548 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | | |||||| ||| || |||| || | || ||||| ||||| || || ||||| Sbjct 8547 ATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAG 8488 Query 127106 ATCTGCATG 127114 ||||||||| Sbjct 8487 ATCTGCATG 8479 >seq1376 Length=62984 Score = 84.2 bits (92), Expect = 2e-11 Identities = 121/168 (72%), Gaps = 2/168 (1%) Strand=Plus/Plus Query 47412 GGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTT 47471 || |||||| ||| | | ||| | ||||||| || || || || ||||||||||| | Sbjct 48951 GGCATGAACTCGGCGCTCATGTGCCAGTACATTGAGTTCGTGGCAGACCGCCTGCTGTAT 49010 Query 47472 CAGCTAAA-GTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACAT 47530 ||| || ||| ||||| ||| || | |||| || || || | ||| ||| || Sbjct 49011 TCGCTTGGTGTGTCC-AAGATCTACAACGTCAAGAACCCGTTTGACTGGATGGACATGAT 49069 Query 47531 TTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 || || |||||||||| ||||| ||||||||||| || ||||| || Sbjct 49070 CTCTCTACAGGGCAAGACTAACTTCTTCGAGAAGCGTGTGGGCGAGTA 49117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475486576582320