Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001707905.1_202016-08- 18] 2,393 sequences; 38,203,779 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq2310 165 1e-35 seq1376 156 5e-33 >seq2310 Length=42645 Score = 165 bits (182), Expect = 1e-35 Identities = 471/715 (66%), Gaps = 17/715 (2%) Strand=Plus/Plus Query 116511 AATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATA 116570 ||| ||||| | ||||| ||||| ||||| ||| || |||||||| | ||| | Sbjct 40552 AATCGTGCCGAGGTTCTGCTGATTAGACTTGCGGTTGGCGGCGTCCTTGTATAACATGAA 40611 Query 116571 TGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATACATCGGCGGCTG-GCA 116629 ||| |||||||| | || | | |||||||| ||| | || | || ||| Sbjct 40612 AGGCACGCCCGTCTCAATCTGCGCGTCCAGAATAGCGAACCACA-----GCTGTTGAGCA 40666 Query 116630 CAG--TGGCGTT--GGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCT 116685 | || | | ||| || || || ||||||||| | || | ||| ||||| Sbjct 40667 TTGATTGTCTTGCGGGCGCGGCCTTCACGCTCGTACTTCTCAAACAGCGTCTCGAACTCC 40726 Query 116686 TCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACC 116744 || ||| |||| ||| | || || || |||| | |||||||| | | ||| | || Sbjct 40727 TCTCCC-CAGCACTCGTACAGACCGGGAGCCTCGTTGGGACAGAACAAACTCCACTTGCC 40785 Query 116745 ACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCG 116804 | |||| || ||||||||||| || || || | ||| || || |||| | || || Sbjct 40786 ATTGGCCTCCACACGCTTCATGAATAGATCCGGCACCCACAGAGCATAGAACAAGTCACG 40845 Query 116805 A-CAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCG 116863 || | || || | | || || || |||| ||||| || || | | ||| | Sbjct 40846 TGCACGGTGCAGCT-CGTTACCATGGTTCTTGCGCAGATCCAAGAACTCAAACACATCAG 40904 Query 116864 CGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCG---ACGACCAGCCTGGTTTA 116920 |||||||||||||||| || | ||| | ||| |||||||| || ||| |||||| | Sbjct 40905 CGTGCCACGGTTCCAGATAAATCGCAAATGATCCCTTGCGTTTACCTCCACCCTGGTCCA 40964 Query 116921 CATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCAT 116980 | || | ||||| ||||||| || || ||||| || ||||| || | || ||| | Sbjct 40965 CGTAACGTGCCGTATCGTTAAACACTCGCAGCATGGGGATGATGCCGTTGGACGAGCCGT 41024 Query 116981 TTGTCCCCCGAATACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCC 117040 | || || || || || | |||| || | ||| || || ||||| || | Sbjct 41025 TCGTGCCGCGGATGTAGCTGTTAGTAGCTCGGATGTTGTGCATACTGATGCCAATGCCTC 41084 Query 117041 CTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGT 117100 |||||||||| ||||| || |||| | ||| || | || || || || || |||| Sbjct 41085 CTGCCCACTTGGAGATGCACGCACACTGTTTCAGAGTGTCATAAATGCCTTCAATAGAGT 41144 Query 117101 CACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGA 117160 || ||| | || | | |||||| |||| |||||| | ||| |||||||| |||| Sbjct 41145 CATCCTGCATGGCCAACAAGAAGCACGAAGACAATTGTGGACGTGGGGTACCAGCATTGA 41204 Query 117161 AGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTATCGTAGGTCTC 117215 | || || || || |||||| |||| | ||| ||||| ||||| ||||| Sbjct 41205 ACAGCGTGGGGGTGGCGTGGGTGAAGAATTTTTGCGACATGAGTTCGTAAGTCTC 41259 >seq1376 Length=62984 Score = 156 bits (172), Expect = 5e-33 Identities = 310/454 (68%), Gaps = 14/454 (3%) Strand=Plus/Minus Query 127225 CTTGCCGTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATT 127284 |||| ||| || || || ||||||||||||||||| ||||| || | || ||| | Sbjct 49124 CTTGGAGTACTCGCCCACACGCTTCTCGAAGAAGTTAGTCTTGCCCTGTAGAGAGATCAT 49065 Query 127285 CTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAG 127344 ||||| | ||||| |||||||| ||| | || | | ||| |||| | | || Sbjct 49064 GTCCATCCAGTCAAACGGGTTCTTGACGTTGTAGATCTTGGACACACCAAGCGAATACAG 49005 Query 127345 GAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG 127404 || || || | ||| |||||||||||| |||| | | |||||||| ||||| || Sbjct 49004 CAGGCGGTCTGCCACGAACTCAATGTACTGGCACATGAGCGCCGAGTTCATGCCGATCAG 48945 Query 127405 GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGAT 127464 | |||||||| ||| | ||| | | || || | |||||| || || | || Sbjct 48944 CTCCACTGGGAGCGAGTCGCTCACAAACTCGTGTTCGATCTTCACAGCGTCACGGATAAT 48885 Query 127465 GGCGTGAATAGTGTCCACCCCAGGTCTATTGCGTAA--AGTCTTGAAGAGTTCCACAG-- 127520 |||| | | | | || || ||| || | || ||| |||| | |||| Sbjct 48884 CTCGTGCACACGCTGCTCC---GGCAGCTTG-GTCACCAG-CTTC--GAGTACAACAGAC 48832 Query 127521 ---CAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGAC 127577 |||| ||| ||| | ||| || ||||| ||||| || || ||||||| ||||| Sbjct 48831 AAGCAAAGTCTGTGTGCATACCTTCATCACGACTAATGAGCTCGTTGGAGAAGCTCAGAC 48772 Query 127578 CTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGA 127637 | ||||||||||| |||||||| | |||||| || | ||||| ||||| |||||||||| Sbjct 48771 CAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGCAAAAGGAGCCCGAGAAGAAGA 48712 Query 127638 TCCCCTCCACACACGCGAACGCAAATAGACGCTC 127671 | ||||||||| || || || | |||||||| Sbjct 48711 TTCCCTCCACAGCTGCAAATGCCAGAAGACGCTC 48678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613488848465880