Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001707905.1_202016-08- 18] 2,393 sequences; 38,203,779 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1376 208 8e-49 seq1862 127 2e-24 seq275 123 2e-23 seq1614 96.9 3e-15 seq322 96.9 3e-15 seq2313 93.3 4e-14 >seq1376 Length=62984 Score = 208 bits (230), Expect = 8e-49 Identities = 416/610 (68%), Gaps = 6/610 (1%) Strand=Plus/Minus Query 132887 ACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGA 132946 ||| || ||||||||||| |||| || || || | |||||| |||||| || Sbjct 48840 ACAACAGACAAGCAAAGTCTGTGTGCATACCTTCATCACGACTAATGAGCTCGTTGGAGA 48781 Query 132947 AAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCG 133006 | ||| || |||||||| || || || |||||||| || |||| | || ||||| Sbjct 48780 AGCTCAGACCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGCAAAAGGAGCCCG 48721 Query 133007 AAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTT 133066 | ||||||| ||||| || || || || |||| || ||||| | | | || ||| Sbjct 48720 AGAAGAAGATTCCCTCCACAGCTGCAAATGCCAGAAGACGCTCCGGGTATGAGGACACTT 48661 Query 133067 TGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGA 133126 | | || ||| | |||||||| ||||| | | || ||||| || || || | Sbjct 48660 TCGGGTCGCACCATCTTAGCGCCCAACTCGCCTTCTTGGTCACACACGGGATGGTCTCAA 48601 Query 133127 TGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCG 133186 | || || || || ||||| | | | | ||| ||||| ||||| || Sbjct 48600 TTGCACGCAGCAGGTGGTCCTTCTCCACAGCGTCCTTGATGTACGTGTCAATGAGCAGCG 48541 Query 133187 AATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCT 133246 | |||| || ||||| | |||||| ||||| ||||| |||||||| ||||| || |||| Sbjct 48540 AGTACACCTCTGAGTGGATGTTCTCAATGGCAATTTGGAAGCCGTAGAAGCAACGAGCCT 48481 Query 133247 CGACCACCTGCACTTCTTGAGCGAAACGCTCGA--CCAGATTTTCGTTGACGATGCCGTC 133304 | |||||| ||||| | || ||| | || |||| || ||||| |||||||| || Sbjct 48480 CAGGCACCTGTACTTCATT-GCTAAA-GTTCATAGCCAGGTTCTCGTTCACGATGCCATC 48423 Query 133305 GCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCG 133364 |||||||| || ||||||| |||||||||||||| || ||||||||||| | | | Sbjct 48422 ACTGGCGGCAAAGAAGGCCAAGACGTGCTTGATGAAGTGACGCTCGTTGTCTGTGAGGTT 48363 Query 133365 CTCCCAGTCGCGCGTGTCCTTGGA-CAGGTCCACCTCCTCGACGGTCCAAAACGACGCCT 133423 ||||||| | | | | || | || ||||| ||| || | ||||| || |||| Sbjct 48362 TCCCCAGTC-CTTGAGGTCGTGTACCAAGTCCAGCTCTTCCGCAGTCCAGAAGCTGGCCT 48304 Query 133424 CGGCTTTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGC 133483 | || || |||||||| ||||| ||| | || ||||| || | ||| || ||| Sbjct 48303 CCGCCTTCTTGTACATCTGCCACACGTCGTGCTCCTGGATGGGGAATAGCACGAAGCGGT 48244 Query 133484 GGGGGTTTTC 133493 |||||||| Sbjct 48243 TCGGGTTTTC 48234 >seq1862 Length=11309 Score = 127 bits (140), Expect = 2e-24 Identities = 142/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || |||||||| |||||||| ||||||| ||| | | Sbjct 8480 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTCGACGTGGAGCCGTCG 8539 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||||| | | | | || | ||||||| ||||| ||||||||||| | ||||| Sbjct 8540 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGAATTCCGCCTGACCAG 8599 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| ||||| ||||| || |||| ||||| ||| ||||||||| Sbjct 8600 CAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTACAAC 8659 Query 38424 ATCCAAAAGG 38433 ||||| |||| Sbjct 8660 ATCCAGAAGG 8669 >seq275 Length=4371 Score = 123 bits (136), Expect = 2e-23 Identities = 168/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || || || || || || |||||||| |||||||| ||||||| ||| | Sbjct 370 AAGATGCAGATCTTTGTGAAGACACTGACGGGCAAGACCATCACGCTCGACGTGGAGCCT 311 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GA 38359 | ||| | | | | || | ||||||| ||||| || || || |||||| || Sbjct 310 TCGGACTCGATCGACAATGTGAAGCAGAAAATCCAAGACAAGGAAGGCAT-CCCGCCTGA 252 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||||| || || | ||| ||||| |||||||| |||| ||||| || | |||||| Sbjct 251 CCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTA 192 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||||| ||||| | || || || ||||||| || || | || ||| Sbjct 191 CAACATCCAGAAGGAGTCTACACTTCACCTGGTGCTTCGCCTGCGTGGTGGC 140 >seq1614 Length=15272 Score = 96.9 bits (106), Expect = 3e-15 Identities = 104/135 (77%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 38337 GACAAAGAGGGAATTCCCGCC-GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGA 38395 ||||| || || || |||||| ||||| ||||| || || | ||| ||||| |||||||| Sbjct 15267 GACAAGGAAGGCAT-CCCGCCTGACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGA 15209 Query 38396 CGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 |||| ||||| || | ||||||||||||||| ||||| | || || || ||||||| Sbjct 15208 GGACGGTCGCACGCTGAGCGACTACAACATCCAGAAGGAGTCTACACTTCACCTGGTGCT 15149 Query 38456 GCGTTTGAGAGGCGG 38470 ||| | | ||||| Sbjct 15148 TCGTCTTCGTGGCGG 15134 >seq322 Length=29637 Score = 96.9 bits (106), Expect = 3e-15 Identities = 104/135 (77%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 38337 GACAAAGAGGGAATTCCCGCC-GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGA 38395 ||||| || || || |||||| ||||| ||||| || || | ||| ||||| |||||||| Sbjct 6 GACAAGGAAGGCAT-CCCGCCTGACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGA 64 Query 38396 CGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 |||| ||||| || | ||||||||||||||| ||||| | || || || ||||||| Sbjct 65 GGACGGTCGCACGCTGAGCGACTACAACATCCAGAAGGAGTCTACACTTCACCTGGTGCT 124 Query 38456 GCGTTTGAGAGGCGG 38470 || || | ||||| Sbjct 125 TCGCCTGCGTGGCGG 139 >seq2313 Length=68569 Score = 93.3 bits (102), Expect = 4e-14 Identities = 100/127 (79%), Gaps = 4/127 (3%) Strand=Plus/Minus Query 38346 GGAATTCCCGCC-GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCG 38404 ||||| |||||| ||||| ||||| || || | ||| ||||| |||||||| |||| || Sbjct 9534 GGAAT-CCCGCCTGACCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCG 9476 Query 38405 CACCCTCAACGACTACAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGA 38463 ||| || |||||||||||||| ||||| ||| ||||| || ||||||||||| || Sbjct 9475 CACTCTGTCGGACTACAACATCCAGAAGGAGAGC-ACGCTCCACCTGGTGCTGCGTCTGC 9417 Query 38464 GAGGCGG 38470 | || || Sbjct 9416 GTGGTGG 9410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500157838581120