Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001707905.1_202016-08- 18] 2,393 sequences; 38,203,779 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq1326 102 3e-16 >seq1326 Length=82781 Score = 102 bits (112), Expect = 3e-16 Identities = 376/585 (64%), Gaps = 8/585 (1%) Strand=Plus/Minus Query 451904 GTGCTTGTAGGAGGTTCTACACGAATTCCTAAAATTCAAGATATGTTGTCTTCTTATTTT 451963 ||||| ||||| || || || || || || || | || | || || | || |||| Sbjct 5233 GTGCTGGTAGGCGGGTCCACGCGTATCCCCAAGGTGCAGCAATTGCTGACGGATTTTTTT 5174 Query 451964 GGAGGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCATATGGTGCTGCA 452023 || ||| |||| | ||| | | || || || |||||||| || | |||||| || Sbjct 5173 CACGGGAAAGAACTGTTCAAGTCCATCAACCCGGACGAAGCTGTGGCGTTCGGTGCTACA 5114 Query 452024 GTTCAAGCAGCTATTCTAACAGGTTCAGATGAT-----GAAAAATTAGGAG-ATATTCTG 452077 ||||| || || ||||||| || | | ||| | || | | || || | ||| Sbjct 5113 GTTCAGGCGGCCATTCTAAGTGGGGCTGGTGACACCTCGTCCAAGTTGCAGGATCTGCTG 5054 Query 452078 TTAGTAGATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGACTAAT 452137 || | || || | || ||||| || ||| | || || || |||||| | ||||| | Sbjct 5053 CTACTGGACGTGGCGCCACTATCGCTCGGACTGGAGACTGCAGGTGGAGTCATGACGACA 4994 Query 452138 TTAATTAAACGAGGAACTTCTATTCCTTGTAAAAAGAGTCAAACATTTAGTACAGCAAGT 452197 | || || || | |||||| ||||||| || || || || Sbjct 4993 CTGATCGCGCGTAACACCACAGTTCCTTCTAAAAAGTCGCAGACGTTCTCGACGTACTCG 4934 Query 452198 GATAACCAACCAGGTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAATGACACGAGAT 452257 |||||||| || ||||| ||||| ||||| ||||| ||||| | ||||| || || Sbjct 4933 GATAACCAGCCTGGTGTGTTGATTCAGGTGTTCGAAGGTGAACGGACGATGACTCGTGAC 4874 Query 452258 AATAATAAACTAGGAGAATTTACTCTTTCAAACATTCCTCCTATGCCAAGGGGAACTCCT 452317 ||| | ||| || | || | | | ||||| || |||| | || | || Sbjct 4873 AATCACCTACTGGGCAAGTTCAATTTGGACGGTATTCCGCCAATGCGCCGTGGTATACCG 4814 Query 452318 CAAATTGAAATTACCTATGATGTTGATGCAAATGGTATTCTTAATGTGAGTGCAGTTGAA 452377 ||||| || | |||| ||| | ||||| ||||||||||| |||||| || || || Sbjct 4813 CAAATCGATGTGACCTTCGATATCGATGCGAATGGTATTCTCAATGTGTCAGCCGTCGAG 4754 Query 452378 AAATCATCTGGAAAATCAGAA-AAAATTACAATTACTAATGATAAAAACCGTTTATCTAA 452436 ||||| |||| || |||| || || || || || || || || ||| |||| | Sbjct 4753 AAATCGACTGG-CAAGGAGAACAAGATCACCATCACGAACGACAAGGGTCGTCTATCGCA 4695 Query 452437 AGAAGATATTGAAAAAATGGTAGATGAAGCAGAAAAATTCAAGGA 452481 || || ||||| ||||||| || || || || |||||||| Sbjct 4694 GGACGAGATTGACCGCATGGTAGCAGAGGCTGATAAGTTCAAGGA 4650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975657823856444