Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001707905.1_202016-08- 18] 2,393 sequences; 38,203,779 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq2310 161 1e-34 seq1376 125 9e-24 seq484 87.8 2e-12 >seq2310 Length=42645 Score = 161 bits (178), Expect = 1e-34 Identities = 1051/1656 (63%), Gaps = 66/1656 (4%) Strand=Plus/Minus Query 111705 TTCATCCACGCAACACCAACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGT 111764 |||| |||||| || || || || ||||| |||||||| ||| | || ||| |||| Sbjct 41229 TTCACCCACGCCACCCCCACGCTGTTCAATGCTGGTACCCCACGTCCACAATTGTCTTCG 41170 Query 111765 TGTTTCCTTATTGCAAACAAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAA 111824 || ||| | | || | |||| || || || | |||||||| | |||||| | | Sbjct 41169 TGCTTCTTGTTGGCCATGCAGGATGACTCTATTGAAGGCATTTATGACACTCTGAAACAG 41110 Query 111825 TGTGCCCAAATCTCAAAGTGGGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCC 111884 ||||| ||||| |||||||| || || || || || || || | || |||| Sbjct 41109 TGTGCGTGCATCTCCAAGTGGGCAGGAGGCATTGGCATCAGTATGCACAACATCCGAGCT 41050 Query 111885 AACAAGTCTCGTATTAGAGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGC 111944 | || || | || || || || || | || || || || ||||| || Sbjct 41049 ACTAACAGCTACATCCGCGGCACGAACGGCTCGTCCAACGGCATCATCCCCATGCTGCGA 40990 Query 111945 GTATTTAACGCCACAGCGCGCTATGTAAACCAAGCTGGGCGT---CGCAAGGGATCTATC 112001 || ||||||| || || || || || |||| | ||| || ||||||||||| | Sbjct 40989 GTGTTTAACGATACGGCACGTTACGTGGACCAGGGTGGAGGTAAACGCAAGGGATCATTT 40930 Query 112002 GCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAAC 112061 || | ||||| || || |||||||| ||| | | |||||| | || |||| ||| Sbjct 40929 GCGATTTATCTGGAACCGTGGCACGCTGATGTGTTTGAGTTCTTGGATCTGCGCAAGAAC 40870 Query 112062 CAAGGTGATGAGGAGGCGCGGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCT 112120 || ||| | || | || | |||| || || | |||| ||||| ||| | || ||||| Sbjct 40869 CATGGTAACGA-GCTGCACCGTGCACGTGACTTGTTCTATGCTCTGTGGGTGCCGGATCT 40811 Query 112121 CTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACC 112180 ||||||||| | || |||| | |||||| ||| | | || ||||| || |||| || Sbjct 40810 ATTCATGAAGCGTGTGGAGGCCAATGGCAAGTGGAGTTTGTTCTGTCCCAACGAGGCTCC 40751 Query 112181 CGGTCTCTCCGA-TGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAG 112239 |||||| | ||| ||| | ||| |||||||| || | || | ||||||||| | Sbjct 40750 CGGTCTGTACGAGTGCTG-GGGAGAGGAGTTCGAGACGCTGTTTGAGAAGTACGAGCGTG 40692 Query 112240 AAAGTCGGGCGACTGC--GACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTC 112297 || | | ||| | || ||| | ||| | ||||| |||||||| | | Sbjct 40691 AAGGCC--GCGCCCGCAAGACAATCAATGCTCAACAGCTGTGGTTCGCTATTCTGGACGC 40634 Query 112298 TCAAACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAA 112357 || | ||||| || || | ||| | ||||| |||||| |||| ||| ||| Sbjct 40633 GCAGATTGAGACGGGCGTGCCTTTCATGTTATACAAGGACGCCGCCAACCGCAAGTCTAA 40574 Query 112358 TCAAAAGAATTTGGGTGTGAT---CAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATT 112414 ||| |||| | || ||| | ||| |||| | || ||| | |||| | Sbjct 40573 TCAGCAGAACCTCGGCACGATTCGCTCGAG---CAACTTGTGCTGTGAAGTGATGGAGTA 40517 Query 112415 TACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGT 112474 ||| |||||| ||| ||||| ||| | || || | || |||||||||| || Sbjct 40516 TACGTCGCCTGATGAGGTGGCCGTGTGCAACTTGGCGTCCGTGGCGCTCCCCAAGTTCGT 40457 Query 112475 GGATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACG-AAAACTG-TC 112532 | ||| || | ||| | || | || || | || || || || || || Sbjct 40456 TG----AGA-ACGCCG-TATTCAACTACAAGAAGCTGTATGATGT--CGTCAAGGTGATC 40405 Query 112533 ACAAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCG---TTGAGACTGCTCGT 112589 ||| ||||| |||| || || || || | ||||||| ||||| ||||| Sbjct 40404 ACACGCAACCTGAACAAGGTCATCGACGTCAACTACTACCCCGTTATTGAG---GCTCGC 40348 Query 112590 AAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTC 112649 || || || ||| | |||||||| ||||| | ||||| || || || ||||| | ||| Sbjct 40347 AATTCCAACATGCGTCACCGTCCTGTTGGTATTGGTGTGCAGGGCCTTGCGGACGCTTTC 40288 Query 112650 AT--TCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATAT 112707 || || | | | || || |||| || ||| || |||| | ||| | Sbjct 40287 ATCCTCATGGACTTTGCGTTCGAGAGTCCG--GAGGCGCGTGAGCTCAACAAGAATATCT 40230 Query 112708 TTGAGACAATGTATCACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGG--TTGATGG 112765 | ||||| || || |||| || | ||| || ||| |||| || ||| || Sbjct 40229 TCGAGACCATCTACTACGCTTCTATGGAGACGTCAATGGAACTGGCCACGGAATTG--GG 40172 Query 112766 TCCATATGAAACCTTTGAGGGTTCTCCAGCTTCA-CAAGGGGTGCTT-CAATTTGATATG 112823 || || || || || ||||||| || || || |||||| ||| || || |||||| Sbjct 40171 CCCGTACGAGACTTTCCAGGGTTCGCCTGC--CAGCAAGGGTATCTTCCAGTTCGATATG 40114 Query 112824 TGGGAAGGTGAGACCAAGCT----TCACTACGACTGGGACGCTCTCAAGGA-ACG--CAT 112876 | |||| || | || || || | ||||||| || || ||||| | | | Sbjct 40113 T-GGAACGTCACGCCTTCCTCCGGTCTGTGGGACTGGGCTGCGCTTAAGGAGAAGGTGGT 40055 Query 112877 CAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGC 112936 || |||| || || || || || || | || || ||||| || || || || || Sbjct 40054 CA---AGAACGGCCTGCGCAATTCGCTCCTGGTCGCGCCGATGCCGACGGCGTCTACGGC 39998 Query 112937 ACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAG 112996 ||| ||| | |||||||| || | | ||||| | ||| | ||||| || | | Sbjct 39997 ACAGATCCTCGGTAATAACGAGTCTATCGAACCGTTCACCTCTAACATGTACAACCGCCG 39938 Query 112997 AACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATCTCGTGGATGACCTCAAAGAGAT 113056 || |||||||||||| || || |||||| | || || |||| || | ||| | Sbjct 39937 CGTGCTTGCGGGAGAGTTTACCATCGTGAACAAGTACCTGATGAATGAGCTGATTGAGCT 39878 Query 113057 TGGTCTCTGGTCCAAGGATATGAAGGATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAA 113116 ||| | ||| | || || | | || |||| | || ||||| | || || Sbjct 39877 GGGTGTGTGGGCTCCTGAGGTGCGTAACCAGATCTTGAATGACGGCGGTTCGGTGCAGAA 39818 Query 113117 TATTGTG-GAT--ATTCCAGATGAAATTAAGAAGTTGTACCGCACAGTTTGGGAAATCAA 113173 |||| | | ||||| || | || ||| || |||| || || ||||| ||||| Sbjct 39817 ---TGTGAGCTCCATTCCGGACCACATCAAGGAGAAGTACAAGACGGTGTGGGAGATCAA 39761 Query 113174 GATGAAG--GATGTCATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAA 113231 | |||| ||| || | ||| || | || ||||||||| || ||| ||| ||||| Sbjct 39760 GCAGAAGTCGAT-TC-TGGACCTGTCTGCGGATCGTGGTGCCTACATCTGTCAGAGTCAG 39703 Query 113232 AGTATGAATCTATTCATGGAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCACATGTAC 113291 |||| | ||| | || || | |||||| | || |||||| | ||| Sbjct 39702 TCGCTGAACATTCACATCGCCGAACCGACAAAAAGCAAGCTTACATCGATGCACTTTTAC 39643 Query 113292 AGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTAC 113327 ||||||||||| ||||| ||||| ||||| ||| Sbjct 39642 GCGTGGAAGAAGGGGCTCAAGACGGGCATGTACTAC 39607 >seq1376 Length=62984 Score = 125 bits (138), Expect = 9e-24 Identities = 119/152 (78%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 102180 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 102239 ||||| || | |||||||| ||| ||||| ||||||||||| || ||||| ||| | Sbjct 48678 GAGCGTCTTCTGGCATTTGCAGCTGTGGAGGGAATCTTCTTCTCGGGCTCCTTTTGCTCC 48737 Query 102240 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 102299 || | |||||||||||||| ||||||||||| ||||| |||||||||||||||| || Sbjct 48738 ATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGAGCTTCTCCAACGAGCTCATT 48797 Query 102300 TCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 |||||| || || | ||| ||| ||||| Sbjct 48798 AGTCGTGATGAAGGTATGCACACAGACTTTGC 48829 >seq484 Length=124669 Score = 87.8 bits (96), Expect = 2e-12 Identities = 260/387 (67%), Gaps = 28/387 (7%) Strand=Plus/Minus Query 176702 GGCCAGAAGTAGTGAATCATATTGAGAATGAGACCCTTGATGTGGGAACCGTCGTTATCG 176761 |||||||||| ||| || | ||||| | |||||||| || || || |||| ||| Sbjct 22024 GGCCAGAAGTGGTGGATGAGATTGATCACCAGACCCTTAATATGACTGCCATCGTGATCT 21965 Query 176762 GCATCCGTCATGATCATGAGACGACCATACCG-AAGC---TCG--GAAACAT-CTTGATA 176814 ||| | ||||||||| || | |||||||| |||| ||| || ||| | | | Sbjct 21964 TGATCTGCCATGATCATCAGGTGGCCATACCGCAAGCCTTTCGTGGACTCATACAT--TT 21907 Query 176815 GTCCTTACCCTGTTGAAGACCCAAGATCTTCTTGAGATCGTT--GAA-CTCTTGGTTTGA 176871 | || ||| |||| |||||| |||||| |||| ||| ||||| |||| Sbjct 21906 GGCCATAC----TTGAGT--CCAAGAA--TCTTGACCACGTTTTGAATCTCTTCGTTTTT 21855 Query 176872 TGTGAGCTGTGTGACAGAGGCATCACGAACATTCTTACA-CTTCCCACGAAGAGGGAAGA 176930 || || | | || ||||| ||||| | || ||| ||||| || || || | Sbjct 21854 CAGGATTTGGGAGTGGCTTGCCTCACGCACATT-TAGCATCTTACCACGCAGCGGAAATA 21796 Query 176931 CACCGTAGTGATCGCGACCAACCACAGAGAGACCCGCAACCGCGAGCGTTTTCGCAGAAT 176990 ||||||||| || | ||||| || | ||||| | || || | ||||| || |||| Sbjct 21795 CACCGTAGTAGTCTCTCCCAACGACGGCAAGACCACCCACAGCTACTGTTTTAGCTGAAT 21736 Query 176991 CACCCTCTGTCACGATGAGTGTACA---CTTGCCAGATTGTGCCGTACCCGCCTTGTTCG 177047 |||||||||| | ||| ||||| || |||||| | || || || || | ||| | Sbjct 21735 CACCCTCTGTAAGGATAAGTGTGCAGTCCTTGCC---CTTCGCAGTGCCGGCGTGGTTGG 21679 Query 177048 CATCATCCAATTTGGGAATACCAGTAA 177074 |||| || | || |||||||| |||| Sbjct 21678 CATCGTCTAGCTTTGGAATACCCGTAA 21652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620723832042960