Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001707905.1_202016-08- 18] 2,393 sequences; 38,203,779 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq2310 147 3e-30 seq1376 120 4e-22 >seq2310 Length=42645 Score = 147 bits (162), Expect = 3e-30 Identities = 453/692 (65%), Gaps = 9/692 (1%) Strand=Plus/Minus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGG 75187 || |||| ||| | | ||| ||||| | || || || |||| | | ||||| || Sbjct 41406 CGAGACTTTGAATACGATTATTTTGGCTTTAAGACACTGGAGAGGGGATATCTCTTCCGT 41347 Query 75188 CTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATC 75247 || | |||| | ||||| || ||| | ||| ||||||| || || | |||||| Sbjct 41346 GTCCACGGCAAAGTGGTGGAACGTCCCCAGCAGATGATCATGCGCGTGGCTCTAGGCATC 41287 Query 75248 CACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTC 75307 ||| | |||| | | | | ||||| ||||| ||||| ||| | ||| Sbjct 41286 CACAAGACGAACATCAAGGCGGCACTTGAGACTTACGAACTCATGTCGCAAAAATTCTTC 41227 Query 75308 ATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGC 75367 | ||||| || || || || |||||||||||||| ||| | || || |||| ||| Sbjct 41226 ACCCACGCCACCCCCACGCTGTTCAATGCTGGTACCCCACGTCCACAATTGTCTTCGTGC 41167 Query 75368 TTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGT 75427 ||| | | |||| |||| ||||| || | || || |||| ||||| | ||||| Sbjct 41166 TTCTTGTTGGCCATGCAGGATGACTCTATTGAAGGCATTTATGACACTCTGAAACAGTGT 41107 Query 75428 GCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAAT 75487 ||| ||||| |||||||| || || ||||| || || || | | |||| | | Sbjct 41106 GCGTGCATCTCCAAGTGGGCAGGAGGCATTGGCATCAGTATGCACAACATCCGAGCTACT 41047 Query 75488 AA-ATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGT 75546 || | || || || || || || || || | || || || || ||||| || || Sbjct 41046 AACAGCT-ACATCCGCGGCACGAACGGCTCGTCCAACGGCATCATCCCCATGCTGCGAGT 40988 Query 75547 ATTTAACGCCACAGCGCGCTATGTAAATCAAGCGGGGCGT---CGCAAGGGGTCCATCGC 75603 ||||||| || || || || || | || | || || |||||||| || | || Sbjct 40987 GTTTAACGATACGGCACGTTACGTGGACCAGGGTGGAGGTAAACGCAAGGGATCATTTGC 40928 Query 75604 GGTCTACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCA 75663 | | || ||||||| ||||| || ||| | | |||||| | || | || ||||| Sbjct 40927 GATTTATCTGGAACCGTGGCACGCTGATGTGTTTGAGTTCTTGGATCTGCGCAAGAACCA 40868 Query 75664 AGGTGACGAAGAGGCTCGGTGTA-GAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTT 75722 ||| ||| || || | ||| | | || | || | | |||||| | || || || | Sbjct 40867 TGGTAACG-AGCTGCACCGTGCACGTGACTTGTTCTATGCTCTGTGGGTGCCGGATCTAT 40809 Query 75723 TCATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAG 75782 |||||||||| || |||| ||| | ||| | | |||||||| || |||| || | Sbjct 40808 TCATGAAGCGTGTGGAGGCCAATGGCAAGTGGAGTTTGTTCTGTCCCAACGAGGCTCCCG 40749 Query 75783 GTCTCTCCGA-CGCGGTGGGTGAGGAGTTTGA 75813 |||| | ||| || | ||| |||||||| || Sbjct 40748 GTCTGTACGAGTGCTG-GGGAGAGGAGTTCGA 40718 >seq1376 Length=62984 Score = 120 bits (132), Expect = 4e-22 Identities = 330/500 (66%), Gaps = 12/500 (2%) Strand=Plus/Plus Query 65023 AAGAAGGCGAAATGGGCAATGAAATGGTTTGACAC-AAAGTCTCGCTCCTTCGCCGAGCG 65081 |||||||||| ||||| | | ||||| ||| | ||||| || ||| | | | ||||| Sbjct 48624 AAGAAGGCGAGTTGGGCGCTAAGATGGTGCGACCCGAAAGTGTC-CTCATACCCGGAGCG 48682 Query 65082 CCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTA 65141 ||| | || ||||| ||||||||| ||||||||||| || || || ||| | || | Sbjct 48683 TCTTCTGGCATTTGCAGCTGTGGAGGGAATCTTCTTCTCGGGCTCCTTTTGCTCCATCTT 48742 Query 65142 TTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCG 65201 ||| | |||||||| ||||||||||| || || ||||||| || || || ||| || Sbjct 48743 CTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGAGCTTCTCCAACGAGCTCATTAGTCG 48802 Query 65202 AGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGACTTTGCGTAATAGACC 65261 ||||| ||| | ||| || ||||| | | | | || || || |||| Sbjct 48803 TGATGAAGGTATGCACACAGACTTTGCTTGTCTGTTGTACTCGAAGCTG-GT----GACC 48857 Query 65262 CA-CTACCGAAAC----TATCCACGCCATCGTGAAAGAGGCGGTTGAGATTGAGAAAGGG 65316 | || ||| | | | | |||| || | || || || |||| || | | | Sbjct 48858 AAGCTGCCGGAGCAGCGTGTGCACGAGATTATCCGTGACGCTGTGAAGATCGAACACGAG 48917 Query 65317 TTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAGAAGATGTCCGAG 65376 || | ||| | |||||| | || ||||| |||||||| | | |||| | || Sbjct 48918 TTTGTGAGCGACTCGCTCCCAGTGGAGCTGATCGGCATGAACTCGGCGCTCATGTGCCAG 48977 Query 65377 TACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGGGTGCCACCCATTTGGAAC 65436 |||||||||| ||| | || || || || | |||| ||| | || | ||| Sbjct 48978 TACATTGAGTTCGTGGCAGACCGCCTGCTGTATTCGCTTGGTGTGTCCAAGATCTACAAC 49037 Query 65437 GCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTTCTTT 65496 | ||||| || ||||||| ||||| | || || | || ||||| |||||||| Sbjct 49038 GTCAAGAACCCGTTTGACTGGATGGACATGATCTCTCTACAGGGCAAGACTAACTTCTTC 49097 Query 65497 GAGAAGCGAGTTGGGGACTA 65516 |||||||| || || || || Sbjct 49098 GAGAAGCGTGTGGGCGAGTA 49117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596551755111840