Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001707905.1_202016-08-
18] 2,393 sequences; 38,203,779 total letters
Query= NC_022988.1
Length=74210
Score E
Sequences producing significant alignments: (Bits) Value
seq2083 104 1e-17
>seq2083
Length=122805
Score = 104 bits (114), Expect = 1e-17
Identities = 321/493 (65%), Gaps = 13/493 (3%)
Strand=Plus/Minus
Query 64836 ATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGAC 64895
||||| ||||| ||| || | ||| || | |||||||||||| | ||||| ||| ||||
Sbjct 38254 ATCGATGCTGAACACGCCATTGACGCTCACTACGCCAAGGCGTTGGGTGTCGACATCGAT 38195
Query 64896 AACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTC 64955
| || || ||||| || | |||||| | || |||| |||| || ||
Sbjct 38194 GAGCTGTACGTTTCCCAGCCCGATTCGGGCGAGGAAGCTTTGGAAATCGCCGATACTCTG 38135
Query 64956 GTCAAGTCTGGCGAGCTGTCCATC--GTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGC 65013
|| ||| || | ||||| | | ||||| | || ||| || || || || ||||
Sbjct 38134 ATCCGGTCCGGTG--CTGTCGACCTTGTCGTGCTGGATAGTGTAGCAGCTCTCGTACCGC 38077
Query 65014 GCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGT 65073
| || ||||| || || || || || ||| || | | ||||| ||||||||||||
Sbjct 38076 GTGCTGAGCTGGAGGGTGAAATGGGTGACCAGCAGATTGCACTGCAAGCGCGCCTCATGA 38017
Query 65074 CGCAGGCCATGCGCAAGCTCACCGGCACCATCTCCAGCACCAAC---ACGCTGACGCTCT 65130
|| || ||||||||||||| || | | |||| ||||| || | | |||
Sbjct 38016 GTCAAGCTTTGCGCAAGCTCACAGGTTCGCTGTCCAAGTCCAACTGTACCATCA---TCT 37960
Query 65131 GGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCA 65190
| |||||| | ||| ||||| | |||| | || || | |||| ||
Sbjct 37959 TCCTGAACCAGATCCGCCAGAAGGTTGGCA---TTATCTTTGGATCTCCTGAGGTGACAT 37903
Query 65191 CGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCA 65250
| || || | ||||| | | |||||| || || || | ||| |||| |||| |
Sbjct 37902 CTGGTGGAACAGCTTTACGCTACTACGCGTCCGTACGGCTAGATATCCGCCGCAAAACGG 37843
Query 65251 CCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACA 65310
|| || || ||||| ||| ||| |||||| || || ||||| | |||||||
Sbjct 37842 CCATCAAAGAGGGCGACCAGGTTGTAGGCAACGAGACGGTAGTCAAGGTGGCTAAGAACA 37783
Query 65311 AGCTGGCCCCGCC 65323
|||||||| ||||
Sbjct 37782 AGCTGGCCTCGCC 37770
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 237340277843083
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |