Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001707905.1_202016-08- 18] 2,393 sequences; 38,203,779 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq1326 102 6e-16 seq618 96.9 3e-14 >seq1326 Length=82781 Score = 102 bits (112), Expect = 6e-16 Identities = 198/292 (68%), Gaps = 3/292 (1%) Strand=Plus/Plus Query 282182 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 282241 ||||||||||| || || ||||| || |||| | |||| |||| || || | ||| Sbjct 5523 ACAAGACGATTGTCGAAGTCTTCGCCACCCAGATGCGTATCACCTGCAGTGGCCTTCACT 5582 Query 282242 TGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCA 282301 | ||| | ||| || |||| | || |||| || ||| ||| || || |||| || Sbjct 5583 TCGAAGATTCCTTCCTCAATACTCAGCAGAGAGACGTCAAAGGTGCCGCCGCCCAGGTCG 5642 Query 282302 AAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCA 282361 ||||| || ||||| || | | || || || ||||| || || | |||||| Sbjct 5643 AAAATGAGCACATTGTGCTCCC---CACGCTTCTTGTCCAGACCGTATGCGATGGCAGCA 5699 Query 282362 GCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTA 282421 || ||||||||||| ||||| | || || || | ||||| || || ||||| || Sbjct 5700 GCCGTTGGTTCATTGATAATGCGCAGCACGTTCAATCCAGCGATGGCGCCGGCATCCTTC 5759 Query 282422 GTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 282473 || || || | || || ||||| ||||| || || || || | || |||| Sbjct 5760 GTCGCCTGGCGCTGCGAGTCGTTGAAATACGCCGGGACGGTCACGACCGCAT 5811 >seq618 Length=67008 Score = 96.9 bits (106), Expect = 3e-14 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 432282 TTGAGAGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCT 432341 ||| | |||||||| ||||||||| | || || | ||||| |||||||||||| | || Sbjct 3986 TTGCGCGGTAAAGAGGGTCGTATTCGTGGTAACCTAATGGGCAAGCGTGTCGATTTTTCG 4045 Query 432342 GCACGTACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCC 432397 || ||||| || || || |||| ||||| |||||| | || ||||||||||||| Sbjct 4046 GCGCGTACTGTCATCACCGCTGACCCTAACATTGCTATTGATCAAGTTGGTGTTCC 4101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740512913812818