Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001707905.1_202016-08- 18] 2,393 sequences; 38,203,779 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq2310 280 1e-70 seq275 152 5e-32 seq1862 125 7e-24 seq1376 125 7e-24 seq1614 102 8e-17 seq322 102 8e-17 >seq2310 Length=42645 Score = 280 bits (310), Expect = 1e-70 Identities = 1189/1848 (64%), Gaps = 60/1848 (3%) Strand=Plus/Plus Query 147953 GCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAGTCGTGCACCGACGA 148012 ||||| |||||||||||||||||||| ||| | ||| ||||| ||||| ||| | Sbjct 39601 GCGCATGTAGTACATGCCCGTCTTGAGCCCCTTCTTCCACGCGTAAAAGTGCATCGATG- 39659 Query 148013 CATGAGCGTG---TACGTCGGGTGCGGC-ACAAACAGATTAAACGACTGGCTCTGGTCAA 148068 | ||| || | ||||| | |||| | | || | |||||| ||||| | Sbjct 39660 --TAAGCTTGCTTTTTGTCGGTT-CGGCGATGTGAATGTTCAGCGACTGACTCTGACAGA 39716 Query 148069 TGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTAT-CTTCATCTCCCAGGCC 148127 || | || ||||| || || | || || | || ||| || | ||| |||||||| || Sbjct 39717 TGTAGGCACCACGATCCGCAGACAGGTCCA-GAATCGACTTCTGCTTGATCTCCCACACC 39775 Query 148128 GTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGCTGCACCGAGCCGCGG 148187 ||||||||| | |||||| || || |||||| | | ||||||||| |||| | Sbjct 39776 GTCTTGTACTTCTCCTTGATGTGGTCCGGAATGGAGCTCACATTCTGCACCGAACCGCCG 39835 Query 148188 TGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCTCGATCAGGTCATCG 148247 | || ||||| || |||| || | | | ||||| ||||| |||| Sbjct 39836 TCATTCAAGATCTGGTTACGCACCTCAGGAGCCCACACACCCAGCTCAATCAGCTCATTC 39895 Query 148248 ATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTG 148307 ||||| |||| ||||| | |||||| || || |||||||| || |||| ||| Sbjct 39896 ATCAGGTACTTGTTCACGATGGTAAACTCTCCCGCAAGCACGCGGCGGTTGTACATGTTA 39955 Query 148308 CTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGC 148367 || |||||||| | |||||||| || || | ||||| || || | ||||| ||| Sbjct 39956 GAGGTGAACGGTTCGATAGACTCGTTATTACCGAGGATCTGTGCCGTAGACGCCGTCGGC 40015 Query 148368 ATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCC 148427 || ||| ||||| ||||| ||||||| ||| || | || ||| || || Sbjct 40016 ATCGGCGCGACCAGGAGCGAATTGCGCAGGCCGTTCTTGACCACCTTCTCCTTAAGCGCA 40075 Query 148428 GCCCAGTCCCAGAG--CGGCG-ACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCG 148484 ||||||||||| || ||| | | || || ||||||||||| ||| |||| | || || Sbjct 40076 GCCCAGTCCCACAGACCGGAGGAAGGCGTGACGTTCCACATATCGAACTGGAAGATACCC 40135 Query 148485 CGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAG 148544 ||| || || |||| | | | |||||| || ||| |||||||| Sbjct 40136 TTGCTGGCAGGCGAACCCTGGAAAGTCTCGTACGGGCCCAATTCCGTGGCCAGTTCCATT 40195 Query 148545 CTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCA---GCGCC 148601 || ||| | | ||||||| || |||||| || | | |||||||| ||||| Sbjct 40196 GACGTCTCCATAGAAGCGTAGTAGATGGTCTCGAAGATATTCTTGTTGAGCTCACGCGCC 40255 Query 148602 GCCG-ACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTAC 148660 ||| |||| ||| ||| | || | | || ||||| ||||||||||| || Sbjct 40256 TCCGGACTC----TCGAACGCAAAGTCCATGAGGATGAAAGCGTCCGCAAGGCCCTGCAC 40311 Query 148661 GCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGC-GGATAGT 148719 || | |||| || ||||| |||||||| ||| || ||| | | || |||| Sbjct 40312 ACCAATACCAACAGGACGGTGACGCATGTTGGAATTGCGAGC-CTCAATAACGGGGTAGT 40370 Query 148720 GGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTT-----TGTAATTCTGC- 148773 |||| |||||||| ||||| || ||||| | |||||| | || | || Sbjct 40371 AGTTGACGTCGATGACCTTGTTCAGGTTGCGTGTGATCACCTTGACGACATCATACAGCT 40430 Query 148774 -GCAGCAATTCAAAATCGTACTTGTCATCTACGATGCATCGGTTCACGGCGATAGAGGCT 148832 | | || || | || || ||| |||| | | || | || | || || Sbjct 40431 TCTTGTAGTTGAATA-CGGCGTTCTCA---ACGA-ACTTGGG--GAGCGCCACGGACGCC 40483 Query 148833 AGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTG 148892 | |||||||||||| |||||| || | | ||||| | | || ||||| ||| Sbjct 40484 AAGTTGCACACGGCCACCTCATCAGGCGACGTATACTCCATCACTTCACAGCACAAGTTG 40543 Query 148893 CTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTAC 148952 || | ||| ||| | ||||| ||||| ||||| |||| ||||||||||| Sbjct 40544 CTCGAGCGAATCGTGCCGAGGTTCTGCTGATTAGACTTGCGGTTGGCGGCGTCCTTGTAT 40603 Query 148953 AGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTAT---GAACCGATGCAGGTCC 149009 | |||| | || |||| || || | ||||| |||| || ||||| ||| | Sbjct 40604 AACATGAAAGGCACGCCCGTCTCAATCTGCGCGTCCAGAATAGCGAACC---ACAGCTGT 40660 Query 149010 TGCGCGCGCACTTGCTGCTCGTAGCGACCCTCCTGCTCGTATAAAGTATACAGCCGCTCG 149069 || || | | || | ||| || || ||||||| | ||||| |||| Sbjct 40661 TGAGCATTGATTGTCTTGCGGGCGCGGCCTTCACGCTCGTACTTCTCAAACAGCGTCTCG 40720 Query 149070 AACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACCAC 149129 ||| |||| || |||| |||| |||||||| || || || || | | |||| Sbjct 40721 AACTCCTCTCCCCAGCACTCGTACAGACCGGGAGCCTCGTTGGGACAGAACAAACTCCAC 40780 Query 149130 ACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAGG 149189 ||| | || | ||| |||||||| || ||||| |||||||| || || || | | | Sbjct 40781 TTGCCATTGGCCTCCACACGCTTCATGAATAGATCCGGCACCCACAGAGCATAGAACAAG 40840 Query 149190 T--CGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGT-TGAGCACGCTGAAT 149246 | || || | ||||| ||| || ||| |||||| | || || | || Sbjct 40841 TCACGTGCACGGTGCAG--CTCGTTACCATGGTTCTTGCGCAGATCCAAGAACTC-AAAC 40897 Query 149247 ATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGCTT---GCCGCCC 149303 | || ||||||||||| || | || | ||| | | |||||||| || || ||| Sbjct 40898 ACATCAGCGTGCCACGGTTCCAGATAAATCGCAAATGATCCCTTGCGTTTACCTCCACCC 40957 Query 149304 TGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTGGCA 149363 ||||| |||| || || | | |||||||||||| | ||| || ||||| ||| Sbjct 40958 TGGTCCACGTAACGTGCCGTATCGTTAAACACTCGCAGCATGGGGATGATGCCGTTGGAC 41017 Query 149364 GTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCCG 149423 | |||||| || || ||| ||| ||||| | ||||||| ||| ||| Sbjct 41018 GAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTAGCTCGGATGTTGTGCATACTGATGCCA 41077 Query 149424 ATGCCGCCGCCGTACTTTGAGATGGCCGCGCA--GTCGCCGAGCGTCGAGTAGATGCCCT 149481 ||||| || | |||| |||||| ||| || || | ||| ||| || ||||| | Sbjct 41078 ATGCCTCCTGCCCACTTGGAGATGCACGCACACTGTTTCAGAGTGTC--ATAAATGCCTT 41135 Query 149482 CGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTGC 149541 | || ||| || ||||| || || |||||||| ||| ||| ||| | || | Sbjct 41136 CAATAGAGTCATCCTGCATGGCCAACAAGAAGCACGAAGACAATTGTGGACGTGGGGTAC 41195 Query 149542 CGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCATCATCTCGTACG 149601 | || ||||| |||||| ||||||| || || |||| || ||| | ||||| | Sbjct 41196 CAGCATTGAACAGCGTGGGGGTGGCGTGGGTGAAGAATTTTTGCGACATGAGTTCGTAAG 41255 Query 149602 ACTCGAGCACGCGGTCCATGTCATCGCC--ATGGATGCCTATGGCGACGCGCATCAGCAT 149659 ||| || | | |||| ||| | |||||||||| || |||||||| | ||| Sbjct 41256 TCTCAAGTGCCGCCTTGATGT--TCGTCTTGTGGATGCCTAGAGCCACGCGCATGATCAT 41313 Query 149660 ATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAGCCGTTTTCTAGTGT 149719 ||||| || || ||| |||||||| | || | || || | || ||||| Sbjct 41314 CTGCTGGGGACGTTCCACCACTTTGCCGTGGACACGGAAGAGATATCCCCTCTCCAGTGT 41373 Query 149720 CTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAATGGC 149767 ||| ||||||| || | ||| |||||||| ||| | ||| |||||| Sbjct 41374 CTTAAAGCCAAAATAATCGTATTCAAAGTCTCGGTCATGGATAATGGC 41421 >seq275 Length=4371 Score = 152 bits (168), Expect = 5e-32 Identities = 154/198 (78%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| |||| || |||| ||| |||||| ||||||||||| Sbjct 171 GTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACC-GTCCTCCAGCTGCTTGCC 229 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || ||||||||||| || ||||||||||||||||| ||| || ||||| Sbjct 230 GGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGGATTTTCTGCTT 289 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | || ||| | ||||||||||||| |||| ||| ||||| ||||| || Sbjct 290 CACATTGTCGATCGAGTCCGAAGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGTGT 349 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 350 CTTCACAAAGATCTGCAT 367 Score = 109 bits (120), Expect = 5e-19 Identities = 107/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || || ||||||||||| || ||||||||||||||||| ||| || ||||| Sbjct 3 GCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGGATTTTCTGCTTC 62 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | || | || ||| | ||||||||||||| |||| ||| ||||| ||||| || Sbjct 63 ACATTGTCGATCGAGTCCGAAGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGTGTC 122 Query 133644 TTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 123 TTCACGAAGATCTGCATG 140 Score = 104 bits (114), Expect = 2e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || || ||||||||||| || ||||||||||||||||| ||| || ||||| Sbjct 4369 GCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGGATTTTCTGCTTC 4310 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | || | || ||| | ||||||||||||| |||| ||| ||||| ||||| || Sbjct 4309 ACATTGTCGATCGAGTCCGAAGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGTGTC 4250 Query 133644 TTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 4249 TTCACAAAGATCTGCAT 4233 >seq1862 Length=11309 Score = 125 bits (138), Expect = 7e-24 Identities = 122/157 (78%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 |||||||||||||||||| ||| | || || ||||||||||| || || || || ||||| Sbjct 8635 GTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGAATTCCCTCCTT 8576 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| ||| || ||||||| | |||| |||| | ||||||||||||| |||| Sbjct 8575 GTCCTGGATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCACGTCGAGCGTGAT 8516 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATG 133661 ||| ||||| ||||| || || || || ||||||||| Sbjct 8515 GGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATG 8479 >seq1376 Length=62984 Score = 125 bits (138), Expect = 7e-24 Identities = 288/424 (68%), Gaps = 11/424 (3%) Strand=Plus/Minus Query 120354 GTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTTCAT 120413 ||||||||| || || ||||| || ||||| || ||||||| | || || ||| ||| Sbjct 49118 GTACTCGCCCACACGCTTCTCGAAGAAGTTAGTCTTGCCCTGTAGAGAGATCATGTCCAT 49059 Query 120414 AAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTG--TACGAGCAGT 120471 | || |||||||| | |||| || || | || |||| | ||| ||||| Sbjct 49058 CCAGTCAAACGGGTTCTTGACGTTGTAG-ATCTTGGACACACCAAGCGAATAC-AGCAGG 49001 Query 120472 CGGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAACGCC 120531 ||||| || || ||||||||||||| ||||||| | || ||||||||| | || | || Sbjct 49000 CGGTCTGCCACGAACTCAATGTACTGGCACATGAGCGCCGAGTTCATGCCGATCAGCTCC 48941 Query 120532 ACCGGCAACGCCGACG-TGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGGC 120590 || || | || | || | | |||||| | || || | ||| || || || || | Sbjct 48940 ACTGGGAGCG-AGTCGCTCACAAACTCGTGTTCGATCTTCACAGCGTCACGGATAATCTC 48882 Query 120591 GAGCATAGTGTGGCCGGGCATCTTGTGTTCGATGCGCGTTCG-GTAGTACAGGCACGCAA 120649 | ||| | || | |||| |||| || || |||| ||| |||| || |||| Sbjct 48881 GTGCACACGCTGCTCCGGCAGCTTG-GTCACCAGC---TTCGAGTACAACAGACAAGCAA 48826 Query 120650 AGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGGCA 120709 |||| ||||||| || || || || || ||||||||| || |||| || |||| Sbjct 48825 AGTCTGTGTGCATACCTTCATCACGACTAATGAGCTCGTTGGAGAAGCTCAGACCAGGCA 48766 Query 120710 TGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGCCCT 120769 ||| || | |||||| |||| |||| | |||| |||||| ||||| | |||| Sbjct 48765 TGAGACCACGCTTCTTGAGCCAGAAGATGGAGCAAAAGGAGCCCGAGAAGAAGATTCCCT 48706 Query 120770 CCAC 120773 |||| Sbjct 48705 CCAC 48702 >seq1614 Length=15272 Score = 102 bits (112), Expect = 8e-17 Identities = 87/105 (83%), Gaps = 2/105 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| |||| || |||| ||| |||||| ||||||||||| Sbjct 15164 GTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACC-GTCCTCCAGCTGCTTGCC 15222 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTC 133567 ||| | || || ||||||||||| || ||||||||||||||||| Sbjct 15223 GGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTC 15267 >seq322 Length=29637 Score = 102 bits (112), Expect = 8e-17 Identities = 87/105 (83%), Gaps = 2/105 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| |||| || |||| ||| |||||| ||||||||||| Sbjct 109 GTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACC-GTCCTCCAGCTGCTTGCC 51 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTC 133567 ||| | || || ||||||||||| || ||||||||||||||||| Sbjct 50 GGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTC 6 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483406339675320