Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001707905.1_202016-08- 18] 2,393 sequences; 38,203,779 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq2310 214 2e-50 seq484 140 4e-28 seq1540 109 6e-19 seq704 91.5 2e-13 >seq2310 Length=42645 Score = 214 bits (236), Expect = 2e-50 Identities = 531/788 (67%), Gaps = 26/788 (3%) Strand=Plus/Minus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTA-CACGCGTGTCCGTGAGACGTAC 53251 |||||||||| || | || |||||| ||||| | || | | | |||||| ||| Sbjct 41309 TCATGCGCGTGGCTCTAGGCATCCACAA-GACGAACATCAAGGCGGCACTTGAGACTTAC 41251 Query 53252 GACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACG 53311 || | ||| ||||| | ||| || |||||||| || || |||||||| |||||||| Sbjct 41250 GAACTCATGTCGCAAAAATTCTTCACCCACGCCACCCCCACGCTGTTCAATGCTGGTACC 41191 Query 53312 AATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGC 53371 | || || |||| |||||| || |||| ||| |||||||||| || || ||| Sbjct 41190 CCACGTCCACAATTGTCTTCGTGCTTCTTGTTGGCCATGCAGGATGACTCTATTGAAGGC 41131 Query 53372 ATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATC 53431 || || || || || || ||||||| ||||||||||||| | || || || || ||| Sbjct 41130 ATTTATGACACTCTGAAACAGTGTGCGTGCATCTCCAAGTGGGCAGGAGGCATTGGCATC 41071 Query 53432 -CACTGCTCGAACGTCCG---TGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCG- 53486 ||| | ||| |||| | | ||| || || ||| || ||||||||| ||| Sbjct 41070 AGTATGCAC-AACATCCGAGCTACTAACAGC-TAC--ATCCGCGGCACGAACGGC-TCGT 41016 Query 53487 CCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGG 53546 || | || ||| | || ||||| || || || ||| | ||||| || ||||| |||||| Sbjct 41015 CCAACGGCATCATCCCCATGCTGCGAGTGTTTAACGATACGGCACGTTACGTGGACCAGG 40956 Query 53547 GTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTA 53606 |||| || || |||||||| || || || || || || || ||||||||||| || | Sbjct 40955 GTGGAGGTAAACGCAAGGGATCATTTGCGATTTATCTGGAACCGTGGCACGCTGATGTGT 40896 Query 53607 TGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGC--TGC-CGTGACC 53663 | ||||| | || ||||| ||| || ||| || ||| ||| | ||| |||||| Sbjct 40895 TTGAGTTCTTGGATCTGCGCAAGAACCATGGTAAC---GAGCTGCACCGTGCACGTGACT 40839 Query 53664 TGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGT 53723 |||| ||||||||| | ||||| || |||||| | |||||| | | ||| Sbjct 40838 TGTTCTATGCTCTGTGGGTGCCGGATCTATTCATGAAGCGTGTGGAGGCCAATGGCAAGT 40779 Query 53724 GGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCA-GGGTGTCTACGGTGAGGAGTTT 53782 || || | || || |||||| ||||| || | | ||| || || |||||||| Sbjct 40778 GGAGTTTGTTCTGTCCCAACGAGGCTCCCGGTCTGTACGAGTG-CTGGGGAGAGGAGTT- 40721 Query 53783 AACGAGA---TGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCG 53839 ||||| ||| | || ||||| | | |||||| | |||| |||| || Sbjct 40720 --CGAGACGCTGTTTGAGAAGTACGAGCGTGAAGGCCGCGCCCGCAAGACAATCAATGCT 40663 Query 53840 CGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGC 53899 | || | ||| || || || | ||| | |||||||| ||| | ||||| Sbjct 40662 CAACAGCTGTGGTTCGCTATTCTGGACGCGCAGATTGAGACGGGCGTGCCTTTCATGTTA 40603 Query 53900 TACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATCGAGC 53959 |||||||| | | |||| ||| || ||| ||||| ||||| || |||||| Sbjct 40602 TACAAGGACGCCGCCAACCGCAAGTCTAATCAGCAGAACCTCGGCACGATTCGCTCGAGC 40543 Query 53960 AACTTATG 53967 ||||| || Sbjct 40542 AACTTGTG 40535 Score = 159 bits (176), Expect = 4e-34 Identities = 530/812 (65%), Gaps = 33/812 (4%) Strand=Plus/Minus Query 55133 ACTCGGAACCTGAACCGGGTCATCGACAAGAATTACTACCCGACTGAAGCGGCGCGCAAG 55192 || || ||||||||| |||||||||| || |||||||| | | ||| ||||| Sbjct 40404 ACACGCAACCTGAACAAGGTCATCGACGTCAACTACTACCCCGTTATTGAGGCTCGCAAT 40345 Query 55193 TCCAACCTCCGGCACCGGCCCATCGCCATCGGTGTACAGGGCTTGGCCGACATCTTCATG 55252 |||||| | || ||||| || | | || ||||| |||||| | || ||| ||||| Sbjct 40344 TCCAACATGCGTCACCGTCCTGTTGGTATTGGTGTGCAGGGCCTTGCGGACGCTTTCATC 40285 Query 55253 ATGCTCGGATTGCCCTTCGAC--TCGGAACCTGCTCGAGAAATTAACCAGGACATCTTC- 55309 | | | || | ||||| || | | || || || | ||| || | |||||| Sbjct 40284 CTCATGGACTTTGCGTTCGAGAGTCCGGAG--GCGCGTGAGCTCAACAAGAATATCTTCG 40227 Query 55310 AGTCGCATCTACTTTGCAGCGCTCGAGGAGTCGTGTCATCTGGCTATGAGCGAGGGGACC 55369 || | |||||||| || | | ||| ||| | ||||| | | ||| | Sbjct 40226 AGAC-CATCTACTACGCTTCTATGGAGACGTCAATGGAACTGGCCACGGAATTGGGCCCG 40168 Query 55370 TACGAGACGTTCCGTGATTCGCCAGCTGACAAGGGACTTCTCCAGTTCGATCTATGG--- 55426 |||||||| |||| | |||||| || |||||| | ||||||||||| | ||| Sbjct 40167 TACGAGACTTTCCAGGGTTCGCCTGCCAGCAAGGGTATCTTCCAGTTCGATATGTGGAAC 40108 Query 55427 GGCAAGTCTGACCCCA---TGTTTGACAAGT------TGAAGCATGACATTCACTTGTGG 55477 | || | || | || ||| ||| | | ||| | | | | | Sbjct 40107 GTCACGCCTTCCTCCGGTCTGTGGGACTGGGCTGCGCTTAAGGAGAAGGTGGTCAAGAAC 40048 Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537 ||||| ||||| || || || || ||||| ||||| || ||||| ||||| |||||| | Sbjct 40047 GGCCTGCGCAATTCGCTCCTGGTCGCGCCGATGCCGACGGCGTCTACGGCACAGATCCTC 39988 Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCA 55597 || || |||||| | |||| |||| ||| | ||||| ||| ||||| || || Sbjct 39987 GGTAATAACGAGTCTATCGAACCGTTCACCTCTAACATGTACAACCGCCGCGTGCTTGCG 39928 Query 55598 GGTGAGTTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGG 55657 || |||||| ||| | |||||| |||| | || || ||| || | |||| Sbjct 39927 GGAGAGTTTACCATCGTGAACAAGTACCTGATGAATGAGCTGATTGAGCTGGGTGTGTGG 39868 Query 55658 AACCCGCAGATCAAGA--CGGATATTGTGCGGAACGGGGGGTCCGTCCAGAATCTGGAG- 55714 || || | | | ||| ||| | |||| || || || |||||| || || Sbjct 39867 GCTCCTGAGGTGCGTAACCAGATCTTGAATG--ACGGCGGTTCGGTGCAGAATGTG-AGC 39811 Query 55715 ---ATTCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGT 55771 ||||| | ||||||||| ||| ||||||||||||||| |||||| | Sbjct 39810 TCCATTCCGGACCACATCAAGGAGAAGTACAAGACGGTGTGGGAGATCAAGCAGAAG--T 39753 Query 55772 CTGATT---GACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAAC 55828 | |||| ||| || ||| ||||||||||| |||||| ||| ||||| |||||| Sbjct 39752 C-GATTCTGGACCTGTCTGCGGATCGTGGTGCCTACATCTGTCAGAGTCAGTCGCTGAAC 39694 Query 55829 ATCTTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAG 55888 || ||| | | || || |||| | | |||||||||||||||| ||||||| Sbjct 39693 ATTCACATCGCCGAACCGACAAAAAGCAAGCTTACATCGATGCACTTTTACGCGTGGAAG 39634 Query 55889 AAGGGACTCAAGACGGGTATGTACTATCTGCG 55920 ||||| ||||||||||| |||||||| |||| Sbjct 39633 AAGGGGCTCAAGACGGGCATGTACTACATGCG 39602 >seq484 Length=124669 Score = 140 bits (154), Expect = 4e-28 Identities = 248/362 (69%), Gaps = 0/362 (0%) Strand=Plus/Minus Query 151874 ATCCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAA 151933 |||| || ||||| || || |||||||| || | ||| || | |||||| || Sbjct 23039 ATCCCGTGCCGATACCATCACTGCCGTTGACAAGCACCATAGGGATAATAGGAATATACC 22980 Query 151934 ACTCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCG 151993 ||||||| || | | |||||||| || | || |||| |||| ||||| | Sbjct 22979 ACTCCGGTTCAATCGACTGACCGTCTTCGTCTAGATAGTTCAGAACGTCGTTGTCTAGTG 22920 Query 151994 GATCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCG 152053 | ||| | || || || || | | || ||||| ||||| || || || |||| Sbjct 22919 GGTCGTAGATTCGGCGCGTGAGCTGCTCCAGGTTGGTGAAAATGTAACGAGAACTAGCCG 22860 Query 152054 CATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGT 152113 ||||||| ||||| ||||| || ||||| || ||| || || |||| | | Sbjct 22859 CATCCTTACCACCCATCAGCCTTGTACCAAATTGACCAATTGGGGATAGAAGGTGAACAT 22800 Query 152114 TGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCAC 152173 ||||| || ||||||| ||| |||| |||||| || |||||||| || ||| |||| Sbjct 22799 TGTTGCTTCCAACGAAATCCTGCGCCATATTCACGATACAGCCCTGCAAACCCGCCTCAC 22740 Query 152174 CGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCCG 152233 |||||||||| || | ||||| | || ||||| |||||||| || ||||| | |||| Sbjct 22739 CGTGGTGATATGCAGAGTGCTCAGAGACATATCCAGCCAACTGTGCTACCTTGAGCTCCG 22680 Query 152234 TC 152235 || Sbjct 22679 TC 22678 >seq1540 Length=78990 Score = 109 bits (120), Expect = 6e-19 Identities = 298/447 (67%), Gaps = 12/447 (3%) Strand=Plus/Minus Query 117152 CCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAAC 117211 || ||||||||||||||||||||||||| || | |||||| | || |||||| ||| | Sbjct 17632 CCCGTTCCGATACCCTCTGCACCATTCACGAGCAGCATCGGGATGATAGGAACATAGTGC 17573 Query 117212 TCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCA--CTCG 117269 ||||||| || | | ||| ||||| | |||| | || ||| | || |||| Sbjct 17572 ACAGGCTCAACAGGGAAACCATCGTCGTCGGCGTAGCGCAACAACGCGTCATCCTCCTCG 17513 Query 117270 GATCGAATATGTTCTTGGTCCACGGTGCTAGGCGAGTGAAAA--TGTAACGAGAGCTTGC 117327 | ||| | || || | || | |||| ||| ||||||||| || || Sbjct 17512 GG--GAACAGCAGACGAGTGTAC--TTCTGGAGCAGTGTAAAGATGTAACGAGGACTAGC 17457 Query 117328 AGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAG 117387 ||||||||||| || | || || || || || || || | || | | || Sbjct 17456 GGCATCCTTGCCTCCTTGTAACCGGGTGCCAAACTGGCCTGATGGGTACAGTAAGGGGAG 17397 Query 117388 GTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTC 117447 || || | || ||| ||| || |||| ||| ||||| || || | ||||| Sbjct 17396 ATTATTAGAACCGACATAGTCCTGCGCCATGTTAACAATTGTCGAGTGCAACGAAGCCTC 17337 Query 117448 ACCATGGTGATACGCCGTCTGCTC-CGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGT 117506 || |||||||| ||||| ||||| | || ||||||||| ||||| |||||||| | | Sbjct 17336 GCCGTGGTGATAGGCCGTGTGCTCACTGCA-GTAGCCCGCAAGCTGGGCCACCTTGACCT 17278 Query 117507 CTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGAC 117566 | ||| || || ||| ||||| ||||| | ||||||||||| ||| |||| Sbjct 17277 CACGCGTAAGTTTGCGCTTCAGGCATGCATAGAGAACCTTGCGCTGCGAAATCTTGAGAC 17218 Query 117567 CATCCGCCACGTGA-GGGATCGAACGC 117592 |||| |||| ||| || | ||| ||| Sbjct 17217 CATCAACCAC-TGACGGTAGCGACCGC 17192 Score = 95.1 bits (104), Expect = 1e-14 Identities = 196/289 (68%), Gaps = 2/289 (1%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 || |||||||| || | || || ||||||||||| ||| | ||| || |||||||| Sbjct 17479 GTAAAGATGTAACGAGGACTAGCGGCATCCTTGCCTCCTTGTAACCGGGTGCCAAACTGG 17420 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 || || || | || | | ||| || || | || || | | ||| |||| || ||| Sbjct 17419 CCTGATGGGTACAGTAAGGGGAGATTATTAGAACCGACATAGTCCTGCGCCATGTTAACA 17360 Query 152149 ATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCC 152208 || || |||| || || ||||||||||| ||||| ||||| | ||| ||| Sbjct 17359 ATTGTCGAGTGCAACGAAGCCTCGCCGTGGTGATAGGCCGTGTGCTCACTGCAGTAGCCC 17300 Query 152209 GCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACC 152268 || | ||| |||||||| | || ||| || || ||| || || || || | ||| Sbjct 17299 GCAAGCTGGGCCACCTTGACCTCACGCGTAAGTTTGCGCTTCAGGCATGCATAGAGAACC 17240 Query 152269 TTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGA-GGAATCGAACGC 152316 |||||||| || || | ||| || ||||| ||| || | ||| ||| Sbjct 17239 TTGCGCTGCGAAATCTTGAGACCATCAACCAC-TGACGGTAGCGACCGC 17192 >seq704 Length=142347 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 124950 CCCATGGCGTCCACATTGGCGGTATACTCGGGCTGATCAAAAGACAGTTTCACATGGGAC 125009 |||| |||||||||| ||| || ||||||| | | |||||||||| ||||||||||||| Sbjct 135320 CCCAAAGCGTCCACATCGGCCGTGTACTCGGCCAGTTCAAAAGACACTTTCACATGGGAC 135379 Query 125010 TGGGCACCTAGGTTGTACACCTC 125032 ||||| |||||||||||||| Sbjct 135380 ATTGCACCCAGGTTGTACACCTC 135402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547199631401400