Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001707905.1_202016-08- 18] 2,393 sequences; 38,203,779 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq2310 338 7e-88 seq1540 174 2e-38 seq1862 141 1e-28 seq275 125 8e-24 seq1614 95.1 1e-14 seq322 84.2 2e-11 seq2313 82.4 9e-11 >seq2310 Length=42645 Score = 338 bits (374), Expect = 7e-88 Identities = 1144/1753 (65%), Gaps = 64/1753 (4%) Strand=Plus/Plus Query 80036 GCGTCCGCAGAT--AGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCAT 80093 |||||||| || ||||||||||||||||||| ||||||||||| |||| | |||||| Sbjct 39595 GCGTCCGCGCATGTAGTACATGCCCGTCTTGAGCCCCTTCTTCCACGCGTAAAAGTGCAT 39654 Query 80094 AGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACA 80153 || | ||||| ||| || | | ||| |||||||| |||||| |||||| Sbjct 39655 CGATGTAAGCTTGCTTTTTGTCGGTTCGGCGATGTGAATGTTCAGCGACTGACTCTGACA 39714 Query 80154 GATGAAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATAC 80213 |||| | || |||||||| || | || || | ||| ||||| || || ||||| || Sbjct 39715 GATGTAGGCACCACGATCCGCAGACAGGTCCAGAATCGACTTCTGCTTGATCTCCCACAC 39774 Query 80214 -----TGTACGATACACCTTACGAAGCTCCTCTGGAATGTC---CAGATTTTGCACACTG 80265 ||||| | | |||| || | | || |||||| || ||| ||||| Sbjct 39775 CGTCTTGTAC--TTCTCCTT--GATG-TGGTCCGGAATGGAGCTCACATTCTGCACCGAA 39829 Query 80266 CCACCGTCCTTTACAATTTGATTTTTCAATTCAGACGTCCAGACACCAAGCTTGTGCAGA 80325 || ||||| || | || || || || |||| | ||| ||||| |||| ||| Sbjct 39830 CCGCCGTCATTCAAGATCTGGTTACGCACCTCAGGAGCCCACACACCCAGCTCAATCAGC 39889 Query 80326 TCTTTCACAAGGTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAGATAC 80385 || |||| |||| |||||| | ||| |||||||||||| || ||| || ||| Sbjct 39890 TCATTCATCAGGTACTTGTTCACGATGGTAAACTCTCCCGCAAGCACGCGGCGGTTGTAC 39949 Query 80386 AGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCC 80445 | ||| | ||| | || || | | |||||| || ||||||||||| ||||| |||| Sbjct 39950 ATGTTAGAGGTGAACGGTTCGATAGACTCGTTATTACCGAGGATCTGTGCCGTAGACGCC 40009 Query 80446 GTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGA------TATCC 80499 ||||||||||| |||||| || ||||| ||||||||| ||||||| | ||| Sbjct 40010 GTCGGCATCGGCGCGACCAGGAGCGAATTGCGCAGGCCG---TTCTTGACCACCTTCTCC 40066 Query 80500 T--CGCGCAAATCTGACCAAAAATCAACCCCAACGCTGTGAC--CCCACATGTCGTGCTG 80555 | ||||| | | || | | | || || ||||| |||||| ||| ||| Sbjct 40067 TTAAGCGCAGCCCAGTCCCACAGACCGGAGGAAGGC-GTGACGTTCCACATATCGAACTG 40125 Query 80556 CAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCC---TCCGTCTT 80612 ||||| |||| || || || ||| ||| ||||||||||||||| |||| | Sbjct 40126 GAAGATACCCTTGCTGGCAGGCGAACCCTGGAAAGTCTCGTACGGGCCCAATTCCG---T 40182 Query 80613 GGCCAGCTC---ACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTT 80669 |||||| || ||| ||||||| | |||| || ||| ||| |||| ||| Sbjct 40183 GGCCAGTTCCATTGACGTCTCCATA---GAAGCGTAGTAGATGGTCTCGAAGATATTCTT 40239 Query 80670 GTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGC 80729 ||| | | ||||||| || ||||||| ||| |||| | ||||| |||| || Sbjct 40240 GTTGAGCTCACGCGCCTCCGGACTCTCGAACGCAAAGTCCATGAGGATGAAAGCGTCCGC 40299 Query 80730 CAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCG-ATCGCTCGGCCTCCG 80788 |||||||| || || || | | || ||||| ||| |||| | || || ||||| Sbjct 40300 AAGGCCCTGCACACCAATACCAACAGGACGGTGACGCATGTTGGAATTGC-GAGCCTCAA 40358 Query 80789 GAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAA 80848 || ||||| |||| |||||||| ||||||||||||||| | ||| | Sbjct 40359 TAACGGGGTAGTAGTTGACGTCGATGACCTTGTTCAGGTTGCGTGTGATCACCTTGACGA 40418 Query 80849 CATCATGAAGTTTCTGAAAGTCGAATTGGTTCCCCTTCACAAATGCCGGAAGGCTCAGGG 80908 |||||| || |||| ||| |||| | || || || || || || || Sbjct 40419 CATCATACAGCTTCTTGTAGTTGAATACGGCGTTCTCAACGAACTTGGGGAGCGCCACGG 40478 Query 80909 ACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCACA 80968 |||||| ||||||||||||||||| |||| ||| |||| | | ||| ||||| Sbjct 40479 ACGCCAAGTTGCACACGGCCACCTCATCAGGCGACGTATACTCCATCACTTCACAGCACA 40538 Query 80969 AATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCT 81028 | || || ||| || || ||||| | ||| || |||||| |||| ||||||| Sbjct 40539 AGTTGCTCGAGCGAATCGTGCCGAGGTTCTGCTGATTAGACTTGCGGTTGGCGGCGTCCT 40598 Query 81029 TGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCT 81088 |||| ||||| | || || ||||| | ||| | | || || ||| ||| | || Sbjct 40599 TGTATAACATGAAAGGCACGCCCGTCTCAATCTGCGCGTCCAGAATAGCGAACCACAGCT 40658 Query 81089 CGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTA-AGCTTCG 81147 | || |||| ||||||| |||||| | | ||||| | | ||| || Sbjct 40659 GTTGAGCATTGATTGTCTTGCGGGCGCGGCCTTCACGCTCGTACTTCTCAAACAGCGTC- 40717 Query 81148 TCGAACT--TGGCACCGTGA--AGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAG 81203 ||||||| | | || | || ||| || | || |||||| || || | || Sbjct 40718 TCGAACTCCTCTCCCCAGCACTCGTACAGACCGG---GAGC-CTCGTTGGGACAGAACAA 40773 Query 81204 GTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGT 81263 ||| | | | | ||| ||| ||||||||| || || | ||| || || Sbjct 40774 ACTCCACTTGCCATTGGCCTCCACACGCTTCATGAATAGATCCGGCACCCACAGAGCATA 40833 Query 81264 GAACAGGTCGCG-GCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGT 81322 ||||| ||| || ||| || | ||| | ||| ||||| ||||| || | || | Sbjct 40834 GAACAAGTCACGTGCA-CGGTGCAGCTCGTTACCATGGTTCTTGCGCAGATCCAAGAACT 40892 Query 81323 CCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCG---ACGGC 81379 | | | || || ||||| || |||||||| | || | || |||||||| || | Sbjct 40893 CAAACACATCAGCGTGCCACGGTTCCAGATAAATCGCAAATGATCCCTTGCGTTTACCTC 40952 Query 81380 CACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCAT 81439 ||||||||| |||||||| || || ||||||| || |||| ||| |||||||| || | Sbjct 40953 CACCCTGGTCCACGTAACGTGCCGTATCGTTAAACACTCGCAGCATGGGGATGATGCCGT 41012 Query 81440 CTGACTGACCGTTCGTACCCACGATACGCGACCCCT--TGGCGCGCACCTTGCTGATTGA 81497 ||| |||||||| || ||| | | | | || || | ||| || Sbjct 41013 TGGACGAGCCGTTCGTGCCGCGGAT--GTAGCTGTTAGTAGCTCGGATGTTGTGCATACT 41070 Query 81498 AAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAAT 81557 | || ||||| |||| |||||| || || |||||| | |||| || |||||||| Sbjct 41071 GATGCCAATGCCTCCTGCCCACTTGGAGATGCACGCACACTGTTTCAGAGTGTCATAAAT 41130 Query 81558 TCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTT 81617 || || || || | | |||| | | |||||| || |||| || || | | Sbjct 41131 GCCTTCAATAGAGTCATCCTGCATGGCCAACAAGAAGCACGAAGACAATTGTGGACGTGG 41190 Query 81618 TGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTC 81677 | || ||||||||||| || ||||| ||||| |||| | | ||||| || || Sbjct 41191 GGTACCAGCATTGAACAGCGTGGGGGTGGCGTGGGTGAAGAATTTTTGCGACATGAGTTC 41250 Query 81678 ATAGGTTTC-CTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATAA 81736 || || || || ||| | || ||||| ||| || || | ||| || ||||| | Sbjct 41251 GTAAGTCTCAAGTGCCGCCTTGATGTTCGTC-TTGTGGATGCCTAGAGCCACGCGCATGA 41309 Query 81737 ACATGTACTGGGG 81749 ||| | |||||| Sbjct 41310 TCATCTGCTGGGG 41322 >seq1540 Length=78990 Score = 174 bits (192), Expect = 2e-38 Identities = 204/274 (74%), Gaps = 4/274 (1%) Strand=Plus/Plus Query 31978 GTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAAC 32037 |||| || || |||||| ||| ||||||||||| | || || ||||| ||| || Sbjct 17208 GTGGTTGATGGTCTCAAGATTTCGCAGCGCAAGGTTCTCTATGCATGCCTGAAGCGCAAA 17267 Query 32038 CTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCA--GAGCAAACGGCCT 32095 || || |||| | |||||||| ||||| |||||||| ||| ||||| ||||||| Sbjct 17268 CTTACGCGTGAGGTCAAGGTGGCCCAGCTTGCGGGCTAC--TGCAGTGAGCACACGGCCT 17325 Query 32096 ATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCG 32155 |||||||||||||||| ||| | || || ||||| ||| | || ||| ||| ||||| Sbjct 17326 ATCACCACGGCGAGGCTTCGTTGCACTCGACAATTGTTAACATGGCGCAGGACTATGTCG 17385 Query 32156 GTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTG 32215 || | ||||| || |||||| | ||||| || |||||||| |||||| | || | Sbjct 17386 GTTCTAATAATCTCCCCTTACTGTACCCATCAGGCCAGTTTGGCACCCGGTTACAAGGAG 17445 Query 32216 GCAAGGATGCTGCGAGCTCCCGTTACATCTTCAC 32249 |||||||||| || || | ||||||||||| || Sbjct 17446 GCAAGGATGCCGCTAGTCCTCGTTACATCTTTAC 17479 >seq1862 Length=11309 Score = 141 bits (156), Expect = 1e-28 Identities = 147/193 (76%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| |||||||| ||||| || || |||||||| || || || || || ||| | Sbjct 8477 ATCATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTCGACGTGGAGCCG 8536 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || ||||||| ||| | ||| ||||| |||||||||||||||||||| || ||| Sbjct 8537 TCGGACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGAATTCCGCCTGAC 8596 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 ||||||||||| || || || || ||||| |||||||| | || || || | ||||| Sbjct 8597 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTAC 8656 Query 27583 AATGTCCAAAAGG 27595 || |||| |||| Sbjct 8657 AACATCCAGAAGG 8669 >seq275 Length=4371 Score = 125 bits (138), Expect = 8e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || || || || || ||| | Sbjct 367 ATGCAGATCTTTGTGAAGACACTGACGGGCAAGACCATCACGCTCGACGTGGAGCCTTCG 308 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || || | ||| ||||| ||||| || |||||||| || || || || |||||| Sbjct 307 GACTCGATCGACAATGTGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCGCCTGACCAG 248 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 |||||||| || || || || ||||| || ||||| | ||| || || ||| ||||| || Sbjct 247 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGC-GACTACAA 189 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || ||||| || || | || || || ||||| Sbjct 188 CATCCAGAAGGAGTCTACACTTCACCTGGTGCTTCGCCTGCGTGGTGG 141 >seq1614 Length=15272 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/139 (76%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 27496 CAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTC 27555 || |||||||| || || || || |||||||||||||| || || || || ||||| || Sbjct 15270 CAAGACAAGGAAGGCATCCCGCCTGACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTG 15211 Query 27556 GAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGT 27614 ||||| | ||| || || ||| ||||| || |||| ||||| || || ||||| || || Sbjct 15210 GAGGACGGTCGCACGCTGAGC-GACTACAACATCCAGAAGGAGTCTACACTTCACCTGGT 15152 Query 27615 CTTGCGTCTTCGCGGTGGA 27633 | |||||||| || ||| Sbjct 15151 GCTTCGTCTTCGTGGCGGA 15133 >seq322 Length=29637 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 27496 CAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTC 27555 || |||||||| || || || || |||||||||||||| || || || || ||||| || Sbjct 3 CAAGACAAGGAAGGCATCCCGCCTGACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTG 62 Query 27556 GAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGT 27614 ||||| | ||| || || ||| ||||| || |||| ||||| || || ||||| || || Sbjct 63 GAGGACGGTCGCACGCTGAGC-GACTACAACATCCAGAAGGAGTCTACACTTCACCTGGT 121 Query 27615 CTTGCGTCTTCGCGGTGG 27632 | || || || || || Sbjct 122 GCTTCGCCTGCGTGGCGG 139 >seq2313 Length=68569 Score = 82.4 bits (90), Expect = 9e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 ||||| || || |||||||||||||| || || ||||| ||||| || ||||| | || Sbjct 9534 GGAATCCCGCCTGACCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGC 9475 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 || || | ||||| || |||| ||||| ||| || || || || ||||||| || Sbjct 9474 ACTCTGTCGGACTACAACATCCAGAAGGAGAGCACGCTCCACCTGGTGCTGCGTCTGCGT 9415 Query 27628 GGTGG 27632 ||||| Sbjct 9414 GGTGG 9410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570293340590160