Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001707905.1_202016-08- 18] 2,393 sequences; 38,203,779 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq905 122 7e-23 >seq905 Length=95649 Score = 122 bits (134), Expect = 7e-23 Identities = 428/666 (64%), Gaps = 23/666 (3%) Strand=Plus/Minus Query 29648 AGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCC 29707 ||||| || | ||||| ||||| ||||| ||||| || | |||||| ||| || || Sbjct 88981 AGCGGCTCTATGTGGTTCAGGTATACGTGTGCATCACCAATAATGTGGATAAATTCGCCA 88922 Query 29708 GGTTCTAGCCCGGTGACGTGAGCCATCATGTA-CGTGAGGAGAGAGTAGCTGGCGATGTT 29766 | || | || | || || |||| || || ||| || || | || ||||||||||| Sbjct 88921 GATTTCAAACCAGCCACTTGGGCCA-CAAGTCGCGTCAGTAGCGCATAACTGGCGATGTT 88863 Query 29767 AAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCC 29826 || ||||| ||||| |||||||| |||| | |||||| | |||||||| | || || Sbjct 88862 GAACGGCACGCCGAGGCCCATGTCAGCTGAACGCTGGTACATTTGGCACGACAATTCGCC 88803 Query 29827 GTCGCTCACGTAAAACTGAC---ACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAA 29883 || |||||||||||||| ||||| || || || || || ||||| | | Sbjct 88802 ATCCGCCACGTAAAACTGACAAAACATG---TGACATGGTGGCAGCGCCATCTCATTGAG 88746 Query 29884 GTCTTTGGGGTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGA---T 29940 ||| || ||||| ||| ||| | || || | ||| ||||| | | | | Sbjct 88745 ATCTGCCGGATTCCACGCAGACAACACAATCCGACGGTCGGTCGGGTTCGTGCGCAATTT 88686 Query 29941 GAGGTCCACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCTGNNNNNNNNN 29999 | || ||| | || || ||||||||||| || | |||||||| Sbjct 88685 GTGGATCAC----CTCAGCAAGTTGATCCACCCCTTGTCCAGTGTAGTCTGCATGCATAT 88630 Query 30000 NNNNNNNNNNNNNNNCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCT 30059 | || || | ||||||||| || || || |||||||||||||| Sbjct 88629 CCGTGTACTTGGCTCCAAAGTGACGCCACTGGAATCCATAAACTGGTCCCAGGTCTCCTA 88570 Query 30060 CTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGA 30119 ||||||| || | || | |||||||| | |||| || || ||| | ||||||| Sbjct 88569 CTTCCCTTGACTGCAGTCCACAACTGTCCAAATACTCTCGCGATCCATTGCCATCCCAGA 88510 Query 30120 TCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCA 30179 | | | |||||| ||| | | | || ||| || | ||||||||| | Sbjct 88509 TATGAATGTCCTTCTGCTGCAGCGTATGCGCACTCGTATCCCCACTAATGAACCACAGTA 88450 Query 30180 GCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAAC----TGT 30235 |||||| | || | |||| || || ||||| ||||| | | || ||| | | Sbjct 88449 ATTCCTCCGCCACACCTCTCCAGAATACTCTCTTAGTCGTCAACAATGGGAACACGTTAT 88390 Query 30236 CCCTTGAGGCCGTACCTCGCCTGAGACCCAAACATGGACAAGACTCCC-GTGCCTGTCCT 30294 ||| | || | | | | | ||||| |||||||| ||||| | |||| || || |||| Sbjct 88389 CCC-TCAGACTGAAGCGCATCTGAGCCCCAAACACCGACAA-AGTCCCTGTCCCCGTCCG 88332 Query 30295 GTCTCC 30300 |||||| Sbjct 88331 GTCTCC 88326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406151354377198