Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001707905.1_202016-08- 18] 2,393 sequences; 38,203,779 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq275 176 9e-39 seq1862 154 3e-32 seq322 113 9e-20 seq2313 105 1e-17 seq769 104 5e-17 seq1614 102 2e-16 seq484 96.9 7e-15 >seq275 Length=4371 Score = 176 bits (194), Expect = 9e-39 Identities = 179/231 (77%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||||||||| ||||| || | || || || |||||||||||||| Sbjct 141 CCACCACGCAGGCGAAGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTC 200 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 |||||||| || ||||| || || || ||||| ||||||| ||| || |||||| ||| Sbjct 201 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 260 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || |||||||||||||| || ||| || || | ||||| | |||||||| || || Sbjct 261 ATGCCTTCCTTGTCTTGGATTTTCTGC-TTCACATTGTCGATCGAGTCCGAAGGCTCCAC 319 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 ||||| ||||| ||||| ||||||| ||||| || || |||||||| || Sbjct 320 GTCGAGCGTGATGGTCTTGCCCGTCAGTGTCTTCACAAAGATCTGCATCTT 370 Score = 114 bits (126), Expect = 3e-20 Identities = 111/140 (79%), Gaps = 2/140 (1%) Strand=Plus/Plus Query 282961 CGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT-TGCT 283019 |||| ||||||| ||| || |||||| ||| || || |||||||||||||| || ||| Sbjct 1 CGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGGATTTTCTGC- 59 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || || | ||||| | |||||||| || || ||||| ||||| ||||| ||||||| Sbjct 60 TTCACATTGTCGATCGAGTCCGAAGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGT 119 Query 283080 GTCTTAACGAATATCTGCAT 283099 ||||| ||||| |||||||| Sbjct 120 GTCTTCACGAAGATCTGCAT 139 Score = 111 bits (122), Expect = 3e-19 Identities = 112/143 (78%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 282961 CGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT-TGCT 283019 |||| ||||||| ||| || |||||| ||| || || |||||||||||||| || ||| Sbjct 4371 CGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGGATTTTCTGC- 4313 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || || | ||||| | |||||||| || || ||||| ||||| ||||| ||||||| Sbjct 4312 TTCACATTGTCGATCGAGTCCGAAGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGT 4253 Query 283080 GTCTTAACGAATATCTGCATTTT 283102 ||||| || || |||||||| || Sbjct 4252 GTCTTCACAAAGATCTGCATCTT 4230 >seq1862 Length=11309 Score = 154 bits (170), Expect = 3e-32 Identities = 149/189 (79%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||| | ||||||||||| ||||| || || || ||||| |||||| Sbjct 8667 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 8608 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATC 283030 | ||| || |||||| |||||| ||||||||||| ||||| || ||| || || | || Sbjct 8607 AGACGCTGCTGGTCAGGCGGAATTCCCTCCTTGTCCTGGATTTTCTGC-TTGACATTGTC 8549 Query 283031 GATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || ||||||| | || || ||||| ||||| ||||| ||||||| ||||| || || Sbjct 8548 AATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAA 8489 Query 283091 TATCTGCAT 283099 |||||||| Sbjct 8488 GATCTGCAT 8480 >seq322 Length=29637 Score = 113 bits (124), Expect = 9e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| |||||||||||||| ||||| || | || || || |||||||||||||| Sbjct 140 ACCGCCACGCAGGCGAAGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCT 81 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 |||||||| || ||||| || || || ||||| ||||||| ||| || |||||| ||| Sbjct 80 CAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGG 21 Query 282992 AATACCCTCCTTGTCTTGGA 283011 || || ||||||||||||| Sbjct 20 GATGCCTTCCTTGTCTTGGA 1 >seq2313 Length=68569 Score = 105 bits (116), Expect = 1e-17 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| || || ||||| || | |||||| || || |||||||||||||| | Sbjct 9409 ACCACCACGCAGACGCAGCACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGA 9468 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||| ||||| || || || || || ||||||| ||| || |||||| ||| Sbjct 9469 CAGAGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGG 9528 Query 282992 AATACC 282997 || || Sbjct 9529 GATTCC 9534 >seq769 Length=53168 Score = 104 bits (114), Expect = 5e-17 Identities = 126/172 (73%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 317025 CGTCGGGAACCCTTCCAACTGACCGTTCACAATCGCCCTCATCAGTGTCGACTTGCCAGC 317084 || |||||| || || | ||| ||||| ||| || | ||| || || ||||| || Sbjct 15327 CGACGGGAAGCCGTCAAGCTGGCCGTTGGAAATGGCGCGCATAAGCGTAGACTTACCGCA 15386 Query 317085 ACCATTGGGGCCGCAAAGACCATACCGATTTCCCTTCTTCAGATTAAAACGGGTGTTGTT 317144 ||| ||||| ||||| ||||| || || | || ||| || || ||||| |||||| Sbjct 15387 ACCGTTGGGACCGCACAGACCGTAACGGTGGCCACGCTTTAGGCGAAGACGGGCGTTGTT 15446 Query 317145 CAGAAGAATCTTACCACCATATGCCAGAGAGAACTCACAATCACACAGGTCC 317196 ||| |||||| ||||||| || || || ||||||||||| | || |||||| Sbjct 15447 CAGCAGAATCATACCACCGTAAGCGAGCGAGAACTCACAGTTGCAAAGGTCC 15498 Score = 84.2 bits (92), Expect = 5e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 316162 TCTTTGTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAGA 316221 || ||||| ||||| || ||||||| || ||||| |||| ||| ||| || Sbjct 14473 TCCTTGTCCTCACCAGACTGGAAACGCCACTGAATGTAGGCGTTGGCAGTCTCGTCGAGG 14532 Query 316222 TGATCCTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGATGC 316281 || || || ||||| |||||||||||||| || |||||||| | |||||| || ||| Sbjct 14533 TGCTCTTCAATGTGATGGAAAGCGTGCTGAGCGACGTAAGCGAAACGCATGGAAGGGTGC 14592 Query 316282 TTCCAAACGCTACCGTTAGTAGTTTCCATCTGCCCTGTTAGCACTTTAATGAGAGTACTT 316341 ||||| || ||||| || | ||| | || || || |||| || || || || Sbjct 14593 TTCCATACCGTACCGACGGTGGGTTCAACCTCACCCGTCAGCATCTTGATCAGCGTCGAC 14652 Query 316342 TTTCCCGCGCCGTT 316355 || || || ||||| Sbjct 14653 TTACCGGCACCGTT 14666 >seq1614 Length=15272 Score = 102 bits (112), Expect = 2e-16 Identities = 106/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| || ||||| ||||| || | || || || |||||||||||||| Sbjct 15134 CCGCCACGAAGACGAAGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTC 15193 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 |||||||| || ||||| || || || ||||| ||||||| ||| || |||||| ||| Sbjct 15194 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 15253 Query 282993 ATACCCTCCTTGTCTTGGA 283011 || || ||||||||||||| Sbjct 15254 ATGCCTTCCTTGTCTTGGA 15272 >seq484 Length=124669 Score = 96.9 bits (106), Expect = 7e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 273773 CAGTTTCGTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACC 273832 ||| || ||||||||||| | | ||| || ||||| ||||| |||||| | ||| Sbjct 22891 CAGGTTGGTGAAAATGTAACGAGAACTAGCCGCATCCTTACCACCCATCAGCCTTGTACC 22832 Query 273833 AAACTGACCC-TCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCA 273891 ||| ||||| | ||| | ||| || | |||||||| || ||| ||||||| |||| Sbjct 22831 AAATTGACCAATTGGGGA-TAGAAGGTGAACATTGTTGCTTCCAACGAAATCCTGCGCCA 22773 Query 273892 TATTCACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGA 273951 ||||||||||| ||||| | |||| ||||||||||| || ||| || | || Sbjct 22772 TATTCACGATACAGCCCTGCAAACCCGCCTCACCGTGGTGATATGCAGAGTGCTCAGAGA 22713 Query 273952 TATAACCACTGAACTGAGCAACCTT 273976 ||| ||| ||||| || ||||| Sbjct 22712 CATATCCAGCCAACTGTGCTACCTT 22688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046707106649022