Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712645.1_202016-08- 24] 2,830 sequences; 37,002,228 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq2096 149 1e-30 seq1704 113 1e-19 seq2145 102 2e-16 seq1577 91.5 3e-13 >seq2096 Length=20288 Score = 149 bits (164), Expect = 1e-30 Identities = 423/635 (67%), Gaps = 29/635 (5%) Strand=Plus/Plus Query 319401 CTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATG 319460 || |||||||| ||| || || |||||||| |||||||||| || | ||||| || Sbjct 14913 CTCCACGAACTTGGAAAGGTTGCCCTTGTAGATCTTCAGCTTACGGGTC---TCGTAGTG 14969 Query 319461 GATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGA 319520 || || || || || | ||| ||||| | ||||||||| ||||| || | || || Sbjct 14970 AATGATGTTCGTACAGACCGTGTCAAGGAAGCTGGAGTCGTGGGACACCATGATGCTCGT 15029 Query 319521 AACGTCCTTAAGGTTGATCAGGTA-TTCAATCAA-CCACCTCACGTTAGACACAGAAAGA 319578 |||| | ||||| ||||||| ||| || | |||| ||||| ||| | Sbjct 15030 CACGTTCGGCAGGTTCGTCAGGTAGTTC--TCGAGCCACGCAACGTTCTTGACATCCAAG 15087 Query 319579 TGGTTGGTCGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGA 319638 ||||| |||||||| ||||||||||| | | || ||| | ||||| ||||| || || Sbjct 15088 TGGTTCGTCGGCTCATCAAGAAGCAGAATGTCGGCCTTCTGAAGCATAGCACGGGCCAGC 15147 Query 319639 GCGAGTTTCATTTTCCACCCTCCGGAAAGAGTGTTAATTG---GGGCAGATTGGCGCTCA 319695 | |||||||| ||||| || || ||||| ||| | | |||| ||| |||| Sbjct 15148 TCCAGTTTCATCTTCCAACCACCCGAAAGGGTGCCCACAGCCTGGGC---TTGCATCTCA 15204 Query 319696 -ATATCAAAGCCA-ACCGATTCTAGAGTAGTTACGATCTTTTCACGAGACCAAATGTTTT 319753 | || ||| ||| | || || |||| || | |||| | || | Sbjct 15205 GCGGTGAAGTCCACGCCGGT--AAGCGTGTCAACGACCTCCTGGCGAG---GAGTG---T 15256 Query 319754 CCTTTACTTGTTCATC--ATTGGCAATGAAGTCAATGATAGCCGTGTTAGAATCGGACCC 319811 |||| | | ||||| | || |||||||| | | || | | | || || | Sbjct 15257 CCTTCAGGTCCTCATCGAACAGG--ATGAAGTCCACAACAGACAGCTCGGCCTCCGAAGC 15314 Query 319812 GTCGAGATCGTGTTCCACGTAAGCAGTTTTCAAAACATC-CGCAGAGGGGAACCCTTCAA 319870 | | | ||| || ||| | |||| |||| | || ||| || ||||| || |||| Sbjct 15315 CTGCAAGTTGTGCTCGACGAACACAGTCTTCAGCTCGTCGCGC-GACGGGAAGCCGTCAA 15373 Query 319871 GCTGGCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCCGTTTGGCCCACACA 319930 |||||||||| |||||||||||| || || || ||||| ||||| || || |||| Sbjct 15374 GCTGGCCGTTGGAAATAGCGCGCATAAGCGTAGACTTACCGCAACCGTTGGGACCGCACA 15433 Query 319931 GACCGTAGCGGTTTCCGCGTTTCAGGTTGAACCGCGTGTTGTTCAGAAGAATTTTTCCAC 319990 ||||||| |||| || || |||||| | || | ||||||||| ||||| | |||| Sbjct 15434 GACCGTAACGGTGGCCACGCTTCAGGCGAAGACGGGCGTTGTTCAGCAGAATCATACCAC 15493 Query 319991 CATATGCCAGAGAAAATTCACAATCACACAGATCC 320025 | || || || || || ||||| | || || ||| Sbjct 15494 CGTAAGCGAGCGAGAACTCACAGTTGCAAAGGTCC 15528 Score = 113 bits (124), Expect = 1e-19 Identities = 142/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 318990 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 319049 ||| ||||| ||||| || ||||||| ||||| || ||||| ||| ||| || Sbjct 14502 CTCCTTGTCCTCACCAGACTGGAAACGCCACTGGATGTAGGCGTTGGCAGTCTCGTCGAG 14561 Query 319050 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 319109 || || || ||||| |||||||| ||||| || |||||||| | |||||| || || Sbjct 14562 GTGCTCTTCAATGTGATGGAAAGCGTGCTGAGCGACGTAAGCGAAACGCATGGAAGGGTG 14621 Query 319110 CTTCCAAACACTACCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCT 319169 |||||| || |||||||||||| ||| | | ||||| |||| ||| || || || Sbjct 14622 CTTCCATACCGTACCGATGGTGGGTTCAACCTCACCCGTCAGCATCTTGATCAGCGTCGA 14681 Query 319170 TTTCCCCGCACCGTT 319184 || || |||||||| Sbjct 14682 CTTACCGGCACCGTT 14696 >seq1704 Length=6733 Score = 113 bits (124), Expect = 1e-19 Identities = 68/72 (94%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||| Sbjct 2038 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGC 1979 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1978 CCCACGGTGGGC 1967 >seq2145 Length=220927 Score = 102 bits (112), Expect = 2e-16 Identities = 550/869 (63%), Gaps = 34/869 (4%) Strand=Plus/Minus Query 229758 GTTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCAACTTTCTG 229817 |||||| ||||| | | ||| ||||| | |||||||||||||||| ||| | ||||| Sbjct 135273 GTTCCCCATCCAGGAGCACGACGTGTGGCAGATGTACAAGAAGGCGGAGGCCAGCTTCTG 135214 Query 229818 GACCACTGAGGAAGTTC----CTCTGAACGCAGACGTCGTCGACTGGCGTGAGAAACTCA 229873 ||| || ||||| | || | || | ||| || |||||| | || |||| Sbjct 135213 GAC---TGCGGAAGAGCTGGACTTGGTACAC-GACCTCAAGGACTGGGGA---AACCTCA 135161 Query 229874 ATGACGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCCGATGGTA 229933 ||| |||| ||||| |||||||| ||| || | | || || || | | ||||| | Sbjct 135160 CAGACAACGAGCGTCACTTCATCAAGCACGTCTTGGCCTTCTTTGCCGCCAGTGATGGCA 135101 Query 229934 TTGTGATGGAAAATCTGCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGC 229993 | |||| || || || | |||||||| |||||| || || ||||| || Sbjct 135100 TCGTGAACGAGAACTTGGCCATGAACTTTAGCAATGAAGTACAAGTGCCTGAGGCTCGTT 135041 Query 229994 AATTTTATGCTTACCAAA----CATTCAACGAATCTATCCATTCTGAACAATATGCTCTG 230049 || || | | ||| | |||| | ||| ||||| || || || | ||| Sbjct 135040 GCTTCTACGGCTTCCAGATTGCCATTGA--GAAC--ATCCACTCAGAGGTGTACTCGCTG 134985 Query 230050 CTTATCGACGCGCTTATTTCCGACGAGCAAGAACGGAACGAGCTTTTTGATGCCATTGAA 230109 || || ||| || || |||| ||| | || | || | ||| ||||| Sbjct 134984 CTCATTGACACGTACATCAAGGACGCTGTGGAAAAGGACCACCTGCTGCGTGCAATTGAG 134925 Query 230110 AACATCCCGGCGGTTCATAACAAGGCAAAGTGGGCTCAGAAATGGCTAGAACCTGGTAAA 230169 | ||||||| || || ||||| | ||||| | || |||| || || | || Sbjct 134924 ACCATCCCGTGTGTGACCAAGAAGGCGAGTTGGGCGCTGAGATGGTGCGACCC--GAAAG 134867 Query 230170 T-----CGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCG 230224 | | | | |||||||| | || | | ||| || || || | || || | Sbjct 134866 TGTCCTCATACCCGGAGCGTCTTCTGGCATTCGCAGCTGTGGAGGGAATCTTCTTCTCGG 134807 Query 230225 GGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGT 230284 | || ||| ||||||| ||||| ||| ||| | |||||||| || | | | Sbjct 134806 GCTCCTTTTGCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGAGCTTCT 134747 Query 230285 CTAACGAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATGTATT 230344 | |||||| |||||||||| || || ||| | || | | || | || |||| | Sbjct 134746 CCAACGAGCTCATCAGTCGTGATGAAGGTATGCACACAGACTTTGCTTGTCTGTTGTACT 134687 Query 230345 CAAAGCTCCAGAACAAGCTACCATTCGAGACGGTCAAACAAATCATTACAGAAGCAGTTG 230404 | ||||| || |||||| || || || | | || || || || || Sbjct 134686 CGAAGCTGGTGACCAAGCTGCCGGAGCAGCGTGTGCACGAGATTATCCGTGACGCTGTGA 134627 Query 230405 AAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC-CTTATTGGCATGAACGCT 230463 | | |||| | |||||| | | ||| | | ||| || | || || ||||||||| | Sbjct 134626 AGATCGAACACGAGTTCGTGAGCGACTCGCTCCCA-GTGGAGCTGATCGGCATGAACTCG 134568 Query 230464 GAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGT--- 230520 | || ||| | |||||||| || ||||| || |||||| | | | | |||||| Sbjct 134567 GCGCTCATGTGCCAGTACATTGAGTTCGTGGCAGACCGCCTGCTGTATTCGCTTGGTGTG 134508 Query 230521 TACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAA 230580 | | ||| | |||||| |||||||| |||| | ||||| | || || || || Sbjct 134507 TCCAAGA---TCTACAACGTCAAGAACCCGTTTGACTGGATGGACATGATCTCTCTACAG 134451 Query 230581 GGGAAGACCAACTTCTTCGAAAAGCGTGT 230609 || ||||||||||||||||| |||||||| Sbjct 134450 GGCAAGACCAACTTCTTCGAGAAGCGTGT 134422 >seq1577 Length=1772 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 165711 CCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCC 165770 |||||||||||||||||||||||||| | ||||||| | ||||||||||||||||||| Sbjct 233 CCCGTCTAGCTCAGTCGGTAGAGCGCTGGCCTTTTAAGCCAGTGGTCGTGGGTTCGAGCC 292 Query 165771 CCACG 165775 ||||| Sbjct 293 CCACG 297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057785643962900