Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712645.1_202016-08- 24] 2,830 sequences; 37,002,228 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq2145 102 8e-17 >seq2145 Length=220927 Score = 102 bits (112), Expect = 8e-17 Identities = 208/307 (68%), Gaps = 4/307 (1%) Strand=Plus/Plus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 || ||||| || ||||| || ||||| || ||||| |||||||| ||||| ||||| Sbjct 134968 ATGTACGTGTCAATGAGCAGCGAGTACACCTCTGAGTGGATGTTCTCAATGGCAATCTGG 135027 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCC--GCTA 17351 || ||||| ||||| || || || | | ||| ||||| | || |||| || | Sbjct 135028 AAGCCGTAGAAGCAACGAGCCTCAGGCACTTGTACTTCATTGCTAAA--GTTCATGGCCA 135085 Query 17352 GATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAAT 17411 || |||||||||||||| || || ||||| || || ||||| | ||||| ||||| | Sbjct 135086 AGTTCTCGTTCACGATGCCATCACTGGCGGCAAAGAAGGCCAAGACGTGCTTGATGAAGT 135145 Query 17412 ATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTT 17471 |||| ||| || | ||||||||| | || | | |||| |||| Sbjct 135146 GACGCTCGTTGTCTGTGAGGTTTCCCCAGTCCTTGAGGTCGTGTACCAAGTCCAGCTCTT 135205 Query 17472 CGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAATATCATTGTATTGTA 17531 | | ||||| || || ||| | ||||| || ||||| | ||| | || | | || | Sbjct 135206 CCGCAGTCCAGAAGCTGGCCTCCGCCTTCTTGTACATCTGCCACACGTCGTGCTCCTGGA 135265 Query 17532 TGGGGAA 17538 ||||||| Sbjct 135266 TGGGGAA 135272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517527291824400