Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712645.1_202016-08- 24] 2,830 sequences; 37,002,228 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq2145 291 8e-74 seq2557 132 5e-26 seq1410 122 9e-23 seq442 98.7 1e-15 >seq2145 Length=220927 Score = 291 bits (322), Expect = 8e-74 Identities = 439/614 (71%), Gaps = 14/614 (2%) Strand=Plus/Minus Query 116591 GAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTAC 116650 |||||||| ||| |||||| | |||||||| || | | ||| |||||| |||||| Sbjct 135296 GAGAACCCGAACCGCTTCGTGCTGTTCCCCATCCAGGAGCACGACGTGTGGCAGATGTAC 135237 Query 116651 AAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG-TCCAAGGACACGAG 116709 || ||||| ||||| |||||||| | || ||| ||||| || | || | | | || Sbjct 135236 AAGAAGGCGGAGGCCAGCTTCTGGACTGCGGAAGAGCTGGACTTGGTACACGACCTCAAG 135177 Query 116710 CGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTT 116769 ||||||| | | | ||||||||||| || |||||||||||||| ||||||| || Sbjct 135176 -GACTGGGGAAACCTCACAGACAACGAGCGTCACTTCATCAAGCACGTCTTGGCCTTCTT 135118 Query 116770 CGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTC--GAGCGTTTCGCTCAGGAGGTG 116827 |||||||| || |||||||| |||||||| ||| | || | ||| || | || || Sbjct 135117 TGCCGCCAGTGATGGCATCGTGAACGAGAACTTGGCCATGAAC-TTTAGCA-ATGAAGTA 135060 Query 116828 CAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCG 116887 || ||| | ||||| || |||||||||||||| ||||| ||||| |||||| | ||||| Sbjct 135059 CAAGTGCCTGAGGCTCGTTGCTTCTACGGCTTCCAGATTGCCATTGAGAACATCCACTCA 135000 Query 116888 GAAATGTATTCGACCCTCATCGACACGTACGT---GCGCTCTTCGGAGGAGAAGCTCCGT 116944 || |||| ||| ||||| ||||||||| | | | || ||| || | | || Sbjct 134999 GAGGTGTACTCGCTGCTCATTGACACGTACATCAAGGACGCTGTGGAAAAGGACCACC-- 134942 Query 116945 TTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGT-GGGCGCTGCG 117003 || || || || ||||| || ||||| || | ||||||| |||| |||||||| | Sbjct 134941 -TGCTGCGTGCAATTGAGACCATCCCGTGTGTGACCAAGAAGGC-GAGTTGGGCGCTGAG 134884 Query 117004 CTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGA 117063 ||| || | | || | || | | | ||||| || |||| ||||| || || || Sbjct 134883 ATGGTGCGACCCGAAAGTGTCCTCATACCCGGAGCGTCTTCTGGCATTCGCAGCTGTGGA 134824 Query 117064 GGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCAT 117123 ||| ||||||| |||||| || | |||| || ||||||||||| || || ||||| Sbjct 134823 GGGAATCTTCTTCTCGGGCTCCTTTTGCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCAT 134764 Query 117124 GCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTT 117183 ||| || |||| ||| ||||||||||||| | || || ||| |||| ||||| Sbjct 134763 GCCTGGTCTGAGCTTCTCCAACGAGCTCATCAGTCGTGATGAAGGTATGCACACAGACTT 134704 Query 117184 TGCCTGTTTGCTGT 117197 ||| ||| || ||| Sbjct 134703 TGCTTGTCTGTTGT 134690 >seq2557 Length=41672 Score = 132 bits (146), Expect = 5e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || || || || || ||||| || ||||| ||||||| || | Sbjct 13873 AAGATGCAGATCTTTGTGAAGACACTGACTGGCAAGACTATCACGCTCGACGTGGAGCCT 13932 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 ||||| | | | | ||| | ||||| | ||||| || |||||||| | ||| Sbjct 13933 TCCGACTCAATCGACAATGTGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCGCCTGAC 13992 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || || |||| ||| ||||| |||||||| |||| ||||| || | ||||||| Sbjct 13993 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTAC 14052 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||||| | || || || || ||| | ||| || | || ||| Sbjct 14053 AACATCCAGAAGGAGTCTACACTTCACCTGGTGCTTCGCCTGCGTGGTGGC 14103 Score = 127 bits (140), Expect = 2e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || || || || || ||||| || ||||| ||||||| || | Sbjct 10018 AAGATGCAGATCTTTGTGAAGACACTGACTGGCAAGACTATCACGCTCGACGTGGAGCCT 9959 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 ||||| | | | | ||| | ||||| | ||||| || |||||||| | ||| Sbjct 9958 TCCGACTCGATCGACAATGTGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCGCCTGAC 9899 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || || |||| ||| ||||| |||||||| |||| ||||| || | ||||||| Sbjct 9898 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTAC 9839 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 ||||||||||||||| | || || || || ||| Sbjct 9838 AACATCCAGAAGGAGTCTACACTTCACCTGGTG 9806 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| || ||||| ||||||| || | || Sbjct 14104 ATGCAGATCTTTGTGAAGACACTGACTGGCAAGACTATCACGCTCGACGTGGAGCCTTCC 14163 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 ||| | | | | ||| | ||||| | ||||| || |||||||| | |||||| Sbjct 14164 GACTCGATCGACAATGTGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCGCCTGACCAG 14223 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| |||||||| |||| ||||| || | |||||||||| Sbjct 14224 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAAC 14283 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 |||||||||||| | || || || || ||| Sbjct 14284 ATCCAGAAGGAGTCTACACTTCACCTGGTG 14313 >seq1410 Length=10983 Score = 122 bits (134), Expect = 9e-23 Identities = 141/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || |||||||| |||||||| ||||||| || | | Sbjct 2644 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTCGACGTGGAGCCGTCG 2585 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||||| | | | ||||| | ||||| | ||||| ||||| || || | |||||| Sbjct 2584 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGAATTCCACCTGACCAG 2525 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| ||||| || |||| ||||| || ||||||||| Sbjct 2524 CAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTGTCGGACTACAAC 2465 Query 40870 ATCCAGAAGG 40879 |||||||||| Sbjct 2464 ATCCAGAAGG 2455 >seq442 Length=77766 Score = 98.7 bits (108), Expect = 1e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 || ||||| | |||||||| || || |||| ||| ||||| |||||||| |||| ||| Sbjct 69714 GGAATCCCGCCTGACCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGC 69773 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 || || ||||||||||||||||||||| |||||| || || ||| |||| || | Sbjct 69774 ACTCTGTCGGACTACAACATCCAGAAGGAGAGCACGCTCCACCTGGTGCTGCGTCTGCGT 69833 Query 40912 GGCGGCGGC 40920 || || ||| Sbjct 69834 GGTGGTGGC 69842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515200974120800