Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712645.1_202016-08- 24] 2,830 sequences; 37,002,228 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq2557 138 1e-27 seq769 131 1e-25 seq1410 107 2e-18 >seq2557 Length=41672 Score = 138 bits (152), Expect = 1e-27 Identities = 163/220 (74%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||| | ||||||||| || || |||||||| ||||||| ||||| ||||| Sbjct 9806 CACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTC 9865 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || || ||| |||| ||||||||||| || || || ||||| ||||||||| Sbjct 9866 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTG 9925 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||||| || || || | |||| | ||| | ||| || |||| || | || || Sbjct 9926 GATTTTCTGCTTCACATTGTCGATCGAGTCGGAAGGCTCCACGTCGAGCGTGATAGTCTT 9985 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCA---TGGCTTAT 118745 ||| ||||| || || ||||| ||||||| |||||||| Sbjct 9986 GCCAGTCAGTGTCTTCACAAAGATCTGCATCTTGGCTTAT 10025 Score = 138 bits (152), Expect = 1e-27 Identities = 157/211 (74%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||| | ||||||||| || || |||||||| ||||||| ||||| ||||| Sbjct 14313 CACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTC 14254 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || || ||| |||| ||||||||||| || || || ||||| ||||||||| Sbjct 14253 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTG 14194 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||||| || || || | |||| | ||| | ||| || |||| || | || || Sbjct 14193 GATTTTCTGCTTCACATTGTCGATCGAGTCGGAAGGCTCCACGTCGAGCGTGATAGTCTT 14134 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||| ||||| || || ||||| ||||||||| Sbjct 14133 GCCAGTCAGTGTCTTCACAAAGATCTGCATG 14103 Score = 136 bits (150), Expect = 3e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||| | ||||||||| || || |||||||| ||||||| ||||| ||||| Sbjct 14085 CACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTC 14026 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || || ||| |||| ||||||||||| || || || ||||| ||||||||| Sbjct 14025 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTG 13966 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||||| || || || | |||| | ||| | ||| || |||| || | || || Sbjct 13965 GATTTTCTGCTTCACATTGTCGATTGAGTCGGAAGGCTCCACGTCGAGCGTGATAGTCTT 13906 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| ||||| || || ||||| |||||||| Sbjct 13905 GCCAGTCAGTGTCTTCACAAAGATCTGCAT 13876 >seq769 Length=43651 Score = 131 bits (144), Expect = 1e-25 Identities = 304/457 (67%), Gaps = 6/457 (1%) Strand=Plus/Plus Query 132917 GCGCAAATAATACATGCCCGTTTTCAGTTTTTTCTCCCACGCGTAAAAGTGTATGCTCGA 132976 ||||| || ||||||||||| || || |||| ||||||||||||||| || ||| Sbjct 39771 GCGCATGTAGTACATGCCCGTCTTGAGCCCCTTCTTCCACGCGTAAAAGTGCAT---CGA 39827 Query 132977 CACCACCGAG---TAAGTGGGTTCGGCGACAAATAAATTCAGCGATTGACTCTGATCTAT 133033 | | | | || |||||||||| | |||||||| ||||||||| || Sbjct 39828 TGTAAGCTTGCTTTTTGTCGGTTCGGCGATGTGAATGTTCAGCGACTGACTCTGACAGAT 39887 Query 133034 GAAAGGAGCACGGTCGGCGGCCATGTTTATTATACACTTTGATTTGATCTCCCATGCCGT 133093 | | | | |||| || || | || || | || |||| ||||||||||| |||| Sbjct 39888 GTAGGCACCACGATCCGCAGACAGGTCCAGAATCGACTTCTGCTTGATCTCCCACACCGT 39947 Query 133094 CTTGAAGAGATTCTTGACATGCTGTGGTATTTCGTCAATGTTCTGCACGGACCCGTTTTC 133153 |||| | | |||||| || | || || | | |||||||| || ||| || Sbjct 39948 CTTGTACTTCTCCTTGACGTGGTTCGGAATGGAGCTCACATTCTGCACCGAACCGCCGTC 40007 Query 133154 GGCCAAAATCTTGTTGCGCAATTCCGGAGTGTAAATGTCGAGATCGATTAGCGCTTTGAC 133213 ||| |||| ||| |||| || |||| | | | || || || ||| | || | Sbjct 40008 ATTCAAGATCTGGTTACGCACCTCAGGAGCCCACACACCCAGCTCAATCAGCTCATTCAT 40067 Query 133214 GAGATACTGGTTGACCACTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCGA 133273 || |||| ||| || | |||||| || || || ||||| | | || | || || Sbjct 40068 CAGGTACTTGTTCACGATGGTAAACTCTCCCGCAAGCACGCGGCGGTTGTACATGTTGGA 40127 Query 133274 CGTGAACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCAT 133333 ||||||||||||| ||| ||||| || ||||| ||||| ||||| | |||||| ||||| Sbjct 40128 GGTGAACGGTTCGATAGACTCGTTATTACCGAGGATCTGTGCCGTAGACGCCGTCGGCAT 40187 Query 133334 GTACGCCACCAACAAAGAGTTTCTTACGCCGTACTTG 133370 ||| |||| | || || | | ||||| |||| Sbjct 40188 CGGCGCGACCAGGAGCGAATTGCGCAGGCCGTTCTTG 40224 >seq1410 Length=10983 Score = 107 bits (118), Expect = 2e-18 Identities = 137/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || || |||||||| || || ||||| ||||||||||| || || ||| |||| Sbjct 2457 TTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 2516 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 ||||||||||| || || || || ||||||||||| ||||| || || || | || Sbjct 2517 AGACGCTGCTGGTCAGGTGGAATTCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 2576 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730 | | |||||| ||| || |||| || | || ||||| ||||| || || ||||| Sbjct 2577 ATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAG 2636 Query 118731 ATCTGCATG 118739 ||||||||| Sbjct 2637 ATCTGCATG 2645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433815436918360