Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712645.1_202016-08- 24] 2,830 sequences; 37,002,228 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq769 302 4e-77 seq2145 172 5e-38 seq2557 154 1e-32 seq1410 118 9e-22 >seq769 Length=43651 Score = 302 bits (334), Expect = 4e-77 Identities = 1216/1893 (64%), Gaps = 41/1893 (2%) Strand=Plus/Plus Query 22105 CTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCC 22164 ||||||||| || ||||| ||||||| || ||| ||| | || |||||||| Sbjct 39729 CTTGTCCACGGTGAACTGGATGGCGTCAGCTTTCGGGCGTCCGCGCATGTAGTACATGCC 39788 Query 22165 CGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGG 22224 |||||| || ||| |||||||||||||||| || ||||| || | || | | |||| Sbjct 39789 CGTCTTGAGCCCCTTCTTCCACGCGTAAAAGTGCATCGATGTAAGCTTGCTTTTTGTCGG 39848 Query 22225 CAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGC 22284 | | |||| | || | ||||||||||||| ||| | || || ||||| || | Sbjct 39849 TTCGGCGATGTGAATGTTCAGCGACTGACTCTGACAGATGTAGGCACCACGATCCGCAGA 39908 Query 22285 CATATTTATCAATGTACGCAT-CGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCT 22343 || | | ||| || | | || ||||| || ||||||||| | | ||| | Sbjct 39909 CAGGTCCAG-AATCGACTTCTGCTTGATCTCCCACACCGTCTTGTACTTCTCCTTGACGT 39967 Query 22344 CTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAA 22403 ||| || || | |||| || || ||| | | | |||| || | Sbjct 39968 GGTTCGGAATGGAGCTCACATTCTGCACCGAACCGCCGTCATTCAAGATCTGGTTACGCA 40027 Query 22404 TCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTT 22463 | | ||||| ||| | | ||| || || | ||| | |||||| | Sbjct 40028 CCTCAGGAGCCCACACACCCAGCTCAATCAGCTCATTCATCAGGTACTTGTTCACGATGG 40087 Query 22464 GAAACTCGCCGGACAAG-ACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGAT 22522 |||||| || | |||| |||||||| | ||| |||||||| ||||||||||||| ||| Sbjct 40088 TAAACTCTCCCG-CAAGCACGCGGCGGTTGTACATGTTGGAGGTGAACGGTTCGATAGAC 40146 Query 22523 TCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAG 22582 || || || || || ||||| || || || || |||||||||||||| | ||| ||||| Sbjct 40147 TCGTTATTACCGAGGATCTGTGCCGTAGACGCCGTCGGCATCGGCGCGACCAGGAGCGAA 40206 Query 22583 TTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATC---G 22639 || | || ||||| ||| | || ||| ||| | ||||||||||||| | | Sbjct 40207 TTGCGCAGGCCGTTCTTGACCACCTTCTCCTTAAGCGCAGCCCAGTCCCACAGACCGGAG 40266 Query 22640 GACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCT 22699 || ||||| || ||||||||||||| | || || | || || || || || Sbjct 40267 GAAGGCGTGAC---GTCCCACATATCGAACTGGAAGATACCCTTGCTGGCAGGCGAACCC 40323 Query 22700 TCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGC-TCGCCTCCAACGCGCC 22758 | | | || |||||||| || || || ||| ||||| || | || ||||| | | Sbjct 40324 TGGAAAGTCTCGTACGGGCCCAATTCCGTGGCCAGTTC-CATCGACGTCTCCATAGAAGC 40382 Query 22759 GTAATATATAGTCTCGAAGATTTTCTTGTTCAATTC-GGCGGCGGCGACGCTTTCGTACG 22817 ||| || || ||||||||||| |||||||| | || ||| | || || ||| ||| Sbjct 40383 GTAGTAGATGGTCTCGAAGATATTCTTGTTGAGCTCACGCGCCTCCG-GACTCTCGAACG 40441 Query 22818 GCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGT 22877 | ||| | | ||| |||||||| | ||||| || || ||||| | || |||| Sbjct 40442 CAAAGTCCATGAGGATGAAAGCGTCCGCAAGGCCCTGCACACCAATACCAACAGGACGGT 40501 Query 22878 TTTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGT 22937 || || || ||||| | || || | || ||||| ||| Sbjct 40502 GACGCATGTTGGAATTGCGAGCCTCAATAACGGGGTAGTAGTTGACGTCGATGACCTTGT 40561 Query 22938 TCAAGTT---TCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGC 22994 ||| ||| | || |||| || || | | ||| | | ||| Sbjct 40562 TCAGGTTGCGTGTGATCAC-CTTGACG--ACCTCATACAGCTTCTTGTAGTTGAACACGG 40618 Query 22995 CCGATTGTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGT 23054 | || | |||| |||||| || || | || || | ||||| |||||||| || | Sbjct 40619 C--GTTCT-CAACGAACTTGGGGAGCGCCACGGACGCCAAGTTGCACACGGCCACTTCAT 40675 Query 23055 CTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAAT 23114 | ||||||||||| | | ||| || | ||||| | |||||||| | | Sbjct 40676 CGGGCGACGTGTACTCCATCACTTCACAGCACAAGTTGCTCGAGCGAATCGTGCCGAGGT 40735 Query 23115 TGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCT 23174 | ||||||| || || ||| | |||||||| |||||| | ||| |||||||| Sbjct 40736 TCTGCTGGTTGGACTTGCGGTTGGCGGCGTCCTTGTACAGCATGAAAGGCACGCCCGTCT 40795 Query 23175 CGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTAC- 23233 | | ||||| || | || || ||||| ||||| | | ||| || | Sbjct 40796 CAATCTGCGCGTCCAGAATAGCGAACCACAGCTGTTGAGCATTGA-TTGTCTTGCGGGCG 40854 Query 23234 CTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCC 23293 | |||||| ||||||||| | ||| || || || || | || | || ||| Sbjct 40855 CGGCCTTCACGCTCGTACTTCTCAAACAGCGTCTCGAACTCCTCTCCCCAGCACTCGTAT 40914 Query 23294 AGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATT---TTCAACGCGT 23350 || ||||| | | | ||||| | | ||||||| | | |||| || || || Sbjct 40915 AGACCGGGAGCCTCGTTGGGACAGAACAAACTCCACTT---GCCATTGGCCTCCACACGC 40971 Query 23351 CTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCT 23410 |||| || |||||||| | ||| ||||| ||||||| || || || || | ||| Sbjct 40972 TTCATGAACAGATCCGGCACCCACAGAGCATAGAACAAGTCACGTGCACGGTGCAGCTCG 41031 Query 23411 TTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGG 23470 || || |||||| ||||||||| || || ||||| || || |||||||| || || Sbjct 41032 TTACCATGGTTCTTGCGCAAATCCAAGAACTCAAACACATCAGCGTGCCACGGTTCCAGA 41091 Query 23471 TAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTG 23530 |||| ||||| | ||| | ||| || ||||| || ||||| || ||||| | | Sbjct 41092 TAAATCGCAAATGATCCCTTGCGTTTACCTCCACCCTGGTCCACGTATCGTGCCGTATCG 41151 Query 23531 TTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTC 23590 || |||||| ||||| || | || |||||||||| |||| | || ||| | Sbjct 41152 TTAAACACTCGCAGCATGGGGATGATGCCGTTGGACGAGCCG--TTCG--TGCCGCGGAT 41207 Query 23591 GAACCTTTT----GCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGA 23646 | | || || ||||| | |||||| | || || |||||||| || | || || Sbjct 41208 GTAGCTGTTAGTAGCTCGGATGTTGTGCATACTGATGCCAATGCCTCCCGCCCACTTGGA 41267 Query 23647 TATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGC 23706 || ||| || |||||||||||||| || ||||| || || ||| || | | || Sbjct 41268 GATGCACGCACACTGTTTCAGAGTGTCATAAATGCCTTCAATAGAGTCATCCTGCATGGC 41327 Query 23707 GACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCT 23766 | |||||| |||||||||| ||| | || ||| | || |||||| || ||| | Sbjct 41328 CAACAAGAAGCACGAAGACAATTGTGGACGTGGAGTACCAGCATTGAACAGCGTGGGGGT 41387 Query 23767 GGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATG-T 23825 |||||| || ||| || | |||||| || | ||| || || | || || | ||| | Sbjct 41388 GGCGTGGGTGAAGAATTTTTGCGACATGAGTTCGTAAGTCTCAAGTGCCGCCTTGATGTT 41447 Query 23826 CCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGA 23885 | ||| ||| || || | || |||||||| ||||| | || || | || ||| Sbjct 41448 CGTCT-TGTGGATGCCTAGAGCCACGCGCATGATCATCTGCTGGGGACGTTCCACCACTT 41506 Query 23886 CGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGT 23945 ||||| | ||| ||||| | | || || ||||| |||||||| || || | Sbjct 41507 TGCCGTGGACACGGAAGAGATAGCCCCTCTCCAGTGTCTTAAAGCCAAAATAATCGTATT 41566 Query 23946 TAAAGTCACGATCGTGCACTATGGCCGAATTCA 23978 |||||| || || || | |||||||| |||| Sbjct 41567 CAAAGTCTCGGTCATGGATAATGGCCGAGTTCA 41599 >seq2145 Length=220927 Score = 172 bits (190), Expect = 5e-38 Identities = 549/835 (66%), Gaps = 16/835 (2%) Strand=Plus/Minus Query 57567 GACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGAC 57626 ||| | ||| | |||||||| ||||| || || || ||||| | ||||| | ||| Sbjct 135254 GACGTGTGGCAGATGTACAAGAAGGCGGAGGCCAGCTTCTGGACTGCGGAAGAGCTGGAC 135195 Query 57627 CTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 || | || || | || |||| ||||| ||| ||| | | || || || Sbjct 135194 TTGGTACACGACCTCAAGGACTGGGGAAACCTCACAGACAACGAGCGTCACTTCATCAAG 135135 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 ||||| ||||| || || ||||| ||||| || || |||||||| |||| | | | Sbjct 135134 CACGTCTTGGCCTTCTTTGCCGCCAGTGATGGCATCGTGAACGAGAACTTGGCCATGA-A 135076 Query 57747 TTTTCACAA-GAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCAT 57805 ||| ||| ||||| |||||| | ||||| | ||||| ||||| || || | ||||| Sbjct 135075 CTTTAGCAATGAAGTACAAGTGCCTGAGGCTCGTTGCTTCTACGGCTTCCAGATTGCCAT 135016 Query 57806 TGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGA 57865 ||| ||| | || ||||| |||| ||||| ||||| || |||||| | |||||| | Sbjct 135015 TGAGAACATCCACTCAGAGGTGTACTCGCTGCTCATTGACACGTACATCAAGGACGCTGT 134956 Query 57866 CGAGAAACGTAGAC-TGTTCAACGCGATCGAAACAATGCCCGCGATCG-CCAAGAAGGCA 57923 || ||| | || || | || || || || || |||| | | |||||||||| Sbjct 134955 GGA-AAAGGACCACCTGCTGCGTGCAATTGAGACCAT-CCCGTGTGTGACCAAGAAGGC- 134899 Query 57924 GAGT-GGTCAATCAAATGGATAAAAAGCGCCACGG-CCACGTTCGCCGAGAGGCTAATCG 57981 |||| || | | | |||| | | || | | || | | | | ||| | || | | Sbjct 134898 GAGTTGGGCGCTGAGATGG-TGCGACCCGAAAGTGTCCTCATACCCGGAGCGTCTTCTGG 134840 Query 57982 CGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGA 58041 | ||||| || || || || || ||||| |||||| |||| | || || ||| | | Sbjct 134839 CATTCGCAGCTGTGGAGGGAATCTTCTTCTCGGGCTCCTTTTGCTCCATCTTCTGGCTCA 134780 Query 58042 AGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGG 58101 |||| || || || ||||| || |||| || ||||||| | || || || || | Sbjct 134779 AGAAGCGTGGTCTCATGCCTGGTCTGAGCTTCTCCAACGAGCTCATCAGTCGTGATGAAG 134720 Query 58102 GTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGCGGG 58161 || | || || || ||||| || || ||||||| | | || | || | | || | Sbjct 134719 GTATGCACACAGACTTTGCTTGTCTGTTGTACTCGAAGCTGGTGACCAAGCTGCCGGAGC 134660 Query 58162 ATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAG 58221 | || | || |||||| || || || ||||||| | ||||| || | ||| Sbjct 134659 AGCGTGTGCACGAGATTATCCGTGACGCTGTGAAGATCGAACACGAGTTCGTGAGCGACT 134600 Query 58222 CCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTG 58281 | || || |||| || |||| |||||| | | |||| ||||||||||||| | Sbjct 134599 CGCTCCCAGTGGAGCTGATCGGCATGAACTCGGCGCTCATGTGCCAGTACATTGAGTTCG 134540 Query 58282 TTGCCGACAGACTTTTGCTCGAACTGATTGGAGAG--CGTCAT-TACAACACGAAAAATC 58338 | || ||| | | |||| | | |||| | | | || |||||| || || | Sbjct 134539 TGGCAGACCGCC---TGCTGTATTCGCTTGGTGTGTCCAAGATCTACAACGTCAAGAACC 134483 Query 58339 CGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGAAAA 58393 ||||||| | ||| | ||||||| || |||||||||| ||||| ||||| || Sbjct 134482 CGTTTGACTGGATGGACATGATCTCTCTACAGGGCAAGACCAACTTCTTCGAGAA 134428 >seq2557 Length=41672 Score = 154 bits (170), Expect = 1e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| ||||| ||||| || ||||| ||||||| || || || Sbjct 14103 CATGCAGATCTTTGTGAAGACACTGACTGGCAAGACTATCACGCTCGACGTGGAGCCTTC 14162 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | || || |||| ||| |||||||||||| | ||||| ||||| Sbjct 14163 CGACTCGATCGACAATGTGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCGCCTGACCA 14222 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || ||||| ||||| ||| |||| ||| | || ||||||| || || Sbjct 14223 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAA 14282 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| || || || || || ||||| ||||| ||| | || | ||||||| Sbjct 14283 CATCCAGAAGGAGTCTACACTTCACCTGGTGCTTCGTCTTCGTGGCGGTA 14332 Score = 149 bits (164), Expect = 6e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || || || ||||| ||||| ||||| || ||||| ||||||| || || Sbjct 10018 AAGATGCAGATCTTTGTGAAGACACTGACTGGCAAGACTATCACGCTCGACGTGGAGCCT 9959 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 |||||| |||| | || || |||| ||| |||||||||||| | ||||| ||| Sbjct 9958 TCCGACTCGATCGACAATGTGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCGCCTGAC 9899 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||||||||| || ||||| ||||| ||| |||| ||| | || ||||||| || Sbjct 9898 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTAC 9839 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| || || || || || ||||| ||||| ||| | || | ||||| Sbjct 9838 AACATCCAGAAGGAGTCTACACTTCACCTGGTGCTTCGTCTTCGTGGCGG 9789 Score = 149 bits (164), Expect = 6e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || || || ||||| ||||| ||||| || ||||| ||||||| || || Sbjct 13873 AAGATGCAGATCTTTGTGAAGACACTGACTGGCAAGACTATCACGCTCGACGTGGAGCCT 13932 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 |||||| |||| | || || |||| ||| |||||||||||| | ||||| ||| Sbjct 13933 TCCGACTCAATCGACAATGTGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCGCCTGAC 13992 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||||||||| || ||||| ||||| ||| |||| ||| | || ||||||| || Sbjct 13993 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTAC 14052 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| || || || || || ||||| ||||| ||| | ||| | || || Sbjct 14053 AACATCCAGAAGGAGTCTACACTTCACCTGGTGCTTCGCCTGCGTGGTGG 14102 >seq1410 Length=10983 Score = 118 bits (130), Expect = 9e-22 Identities = 122/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 || |||||| || || || ||||| ||||| ||||| || ||||| ||||||| || || Sbjct 2648 AATCATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTCGACGTGGAGCC 2589 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 ||| ||||| | || | ||||| |||| ||| ||||||||| || | || || || Sbjct 2588 GTCGGACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGAATTCCACCTGA 2529 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 |||||||||||| || ||||| ||||| ||| | || ||| Sbjct 2528 CCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGAC 2489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445750631013600