Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712645.1_202016-08- 24] 2,830 sequences; 37,002,228 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq2145 168 1e-36 seq769 127 3e-24 >seq2145 Length=220927 Score = 168 bits (186), Expect = 1e-36 Identities = 391/585 (67%), Gaps = 7/585 (1%) Strand=Plus/Plus Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011 ||| || ||| || || || ||||| ||| || || | ||| || || |||||||| | Sbjct 134690 ACAACAGACAAGCAAAGTCTGTGTGCATACCTTCATCACGACTGATGAGCTCGTTGGAGA 134749 Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAG 50071 | | || || ||||| || |||||||| || ||||| || ||||| ||| || || | Sbjct 134750 AGCTCAGACCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGCAAAAGGAGCCCG 134809 Query 50072 AAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG-CGCTG 50130 | ||||||||||| || || || || || || | ||| | ||| || || | || Sbjct 134810 AGAAGAAGATTCCCTCCACAGCTGCGAATGCCAGAAGACGCTCCGGGTATGAGGACACTT 134869 Query 50131 TCATGT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 50188 || || ||| | | |||||| |||||||| | ||||| || || || || | Sbjct 134870 TCGGGTCGCACCATCTCAGCGCCCAACTCGCCTTCTTGGTCACACACGGGATGGTCTCAA 134929 Query 50189 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 50248 | ||| | || | || ||||| | || || | || || || || | || Sbjct 134930 TTGCACGCAGCAGGTGGTCCTTTTCCACAGCGTCCTTGATGTACGTGTCAATGAGCAGCG 134989 Query 50249 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 50308 |||| || || || ||||| |||||||| ||||| || |||||||| || | ||||| Sbjct 134990 AGTACACCTCTGAGTGGATGTTCTCAATGGCAATCTGGAAGCCGTAGAAGCAACGAGCCT 135049 Query 50309 CGGTAATCTGCACTTCTGTACAAAATCGTTCA--GCTAAATTTTCATTCACTATTCCGTC 50366 | | | || ||||| | | ||| ||||| || || || || ||||| || || || Sbjct 135050 CAGGCACTTGTACTTCATTGCTAAA--GTTCATGGCCAAGTTCTCGTTCACGATGCCATC 135107 Query 50367 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTT 50426 |||||| ||||| || ||||| || || || || || || |||||| ||| || || Sbjct 135108 ACTGGCGGCAAAGAAGGCCAAGACGTGCTTGATGAAGTGACGCTCGTTGTCTGTGAGGTT 135167 Query 50427 ATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTC 50486 ||| || |||| || | | || | |||||| | ||||| || ||||| Sbjct 135168 TCCCCAGTCCTTGAGGTCGTGTACCAAGTCCAGCTCTTCCGCAGTCCAGAAGCTGGCCTC 135227 Query 50487 TGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAA 50531 ||||| || ||||| | ||| | ||| || | ||||| ||||| Sbjct 135228 CGCCTTCTTGTACATCTGCCACACGTCGTGCTCCTGGATGGGGAA 135272 >seq769 Length=43651 Score = 127 bits (140), Expect = 3e-24 Identities = 467/727 (64%), Gaps = 6/727 (1%) Strand=Plus/Plus Query 79861 TCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGAC 79920 |||||||| |||||||| |||| || || ||| |||| ||||| | ||| | Sbjct 40888 TCGAACTCCTCTCCCCAGCACTCGTATAGACCGGGAGCCTCGTTGGGACAGAACAAACTC 40947 Query 79921 CACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AA 79979 |||| |||| ||| || || ||||| || ||||| || | ||| ||||| ||| || Sbjct 40948 CACTTGCCATTGGCCTCCACACGCTTCATGAACAGATCCGGCACCCACAGAGC-ATAGAA 41006 Query 79980 TAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 80039 | || | | | ||| |||||| || ||||| | ||| | |||| | | Sbjct 41007 CAAGTCACGTGCACGGTGCAGCTCGTTACCATGGTTCTTGCGCAAATCCAAGAACTCAAA 41066 Query 80040 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCC 80099 | ||||| ||||||||||||| || || || | |||| ||||| ||| || Sbjct 41067 CACATCAGCGTGCCACGGTTCCAGATAAATCGCAAATGATCCCTTGCGTTTACCTCCACC 41126 Query 80100 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 80159 ||| || | ||||| || || | ||| | |||| || ||| || || || || ||||| Sbjct 41127 CTGGTCCACGTATCGTGCCGTATCGTTAAACACTCGCAGCATGGGGATGATGCCGTTGGA 41186 Query 80160 TGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATAT--TACTAATTGATAGA 80217 | || || || ||| ||| ||||| | | || || || | | | | |||| Sbjct 41187 CGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTAGCTCGGATGTTGTGCATACTGAT--G 41244 Query 80218 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 80277 || || || || ||| || ||||| | || || |||| | || ||||| ||||| Sbjct 41245 CCAATGCCTCCCGCCCACTTGGAGATGCACGCACACTGTTTCAGAGTGTCATAAATGCCT 41304 Query 80278 TCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 80337 || || ||||| |||| | | || || ||||| ||| |||| ||| Sbjct 41305 TCAATAGAGTCATCCTGCATGGCCAACAAGAAGCACGAAGACAATTGTGGACGTGGAGTA 41364 Query 80338 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTAC 80397 || ||||| || | || || | ||||| || || |||||| |||| || | ||| Sbjct 41365 CCAGCATTGAACAGCGTGGGGGTGGCGTGGGTGAAGAATTTTTGCGACATGAGTTCGTAA 41424 Query 80398 GTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATG 80457 ||||||| || | | || | | | || || |||| || || ||||| | ||| Sbjct 41425 GTCTCAAGTGCCGCCTTGATGTTCGTCTTGTGGATGCCTAGAGCCACGCGCATGATCATC 41484 Query 80458 TGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTT 80517 ||||| || | ||| || | ||| | | || | || | |||| || Sbjct 41485 TGCTGGGGACGTTCCACCACTTTGCCGTGGACACGGAAGAGATAGCCCCTCTCCAGTGTC 41544 Query 80518 TTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTA 80577 ||||| |||||||| | |||| ||||||||| || | ||||| ||||||| |||| Sbjct 41545 TTAAAGCCAAAATAATCGTATTCAAAGTCTCGGTCATGGATAATGGCCGAGTTCAGTTGG 41604 Query 80578 TCCTTAT 80584 || |||| Sbjct 41605 TCTTTAT 41611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718243391241200