Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712645.1_202016-08- 24] 2,830 sequences; 37,002,228 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2145 158 2e-33 seq769 134 2e-26 >seq2145 Length=220927 Score = 158 bits (174), Expect = 2e-33 Identities = 311/456 (68%), Gaps = 7/456 (2%) Strand=Plus/Plus Query 42057 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAA 42116 ||| || ||| || || || ||||| ||| ||||| | ||| || | |||||||| | Sbjct 134690 ACAACAGACAAGCAAAGTCTGTGTGCATACCTTCATCACGACTGATGAGCTCGTTGGAGA 134749 Query 42117 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAG 42176 | | || || ||||| || |||||||| || ||||| || || || ||| || || | Sbjct 134750 AGCTCAGACCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGCAAAAGGAGCCCG 134809 Query 42177 AAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG-CACTG 42235 | ||||||||||| || || || || || || | ||| | ||| || || |||| Sbjct 134810 AGAAGAAGATTCCCTCCACAGCTGCGAATGCCAGAAGACGCTCCGGGTATGAGGACACTT 134869 Query 42236 TCATGT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 42293 || || ||| | | |||||| |||||||| | ||||| || || || || | Sbjct 134870 TCGGGTCGCACCATCTCAGCGCCCAACTCGCCTTCTTGGTCACACACGGGATGGTCTCAA 134929 Query 42294 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGAC 42353 | ||| | || | || ||||| | || || | || || || || | || Sbjct 134930 TTGCACGCAGCAGGTGGTCCTTTTCCACAGCGTCCTTGATGTACGTGTCAATGAGCAGCG 134989 Query 42354 TATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCT 42413 |||| ||||| || ||||| |||||||| ||||| || |||||||| || | |||| Sbjct 134990 AGTACACCTCTGAGTGGATGTTCTCAATGGCAATCTGGAAGCCGTAGAAGCAACGAGCCT 135049 Query 42414 CGGTAACCTGTACTTCTGTACAAAATCGTTCA--GCTAAATTTTCGTTCACTATTCCGTC 42471 | | || |||||||| | | ||| ||||| || || || |||||||| || || || Sbjct 135050 CAGGCACTTGTACTTCATTGCTAAA--GTTCATGGCCAAGTTCTCGTTCACGATGCCATC 135107 Query 42472 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA 42507 |||||| ||||| || ||||| || || || || || Sbjct 135108 ACTGGCGGCAAAGAAGGCCAAGACGTGCTTGATGAA 135143 >seq769 Length=43651 Score = 134 bits (148), Expect = 2e-26 Identities = 471/728 (65%), Gaps = 8/728 (1%) Strand=Plus/Plus Query 71944 TCGAACTCGTCTCCCCAAGCATT-GTCTAATCCAGGACATTCATTCGGACACATCAATGA 72002 |||||||| |||||||| ||| | || || || ||| || || ||||| | ||| Sbjct 40888 TCGAACTCCTCTCCCCA-GCACTCGTATAGACCGGGAGCCTCGTTGGGACAGAACAAACT 40946 Query 72003 CCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-A 72061 ||||| |||| | | || || ||||| || ||||| || | ||| ||||| ||| | Sbjct 40947 CCACTTGCCATTGGCCTCCACACGCTTCATGAACAGATCCGGCACCCACAGAGC-ATAGA 41005 Query 72062 ATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 72121 | | || | | | ||| |||||| || ||||| | ||| | |||| | | Sbjct 41006 ACAAGTCACGTGCACGGTGCAGCTCGTTACCATGGTTCTTGCGCAAATCCAAGAACTCAA 41065 Query 72122 TAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTC 72181 | ||||| ||||||||||||| || || || | |||| ||||| ||| | Sbjct 41066 ACACATCAGCGTGCCACGGTTCCAGATAAATCGCAAATGATCCCTTGCGTTTACCTCCAC 41125 Query 72182 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGG 72241 |||| || | ||||| || || | ||| | |||| || ||| || || || || |||| Sbjct 41126 CCTGGTCCACGTATCGTGCCGTATCGTTAAACACTCGCAGCATGGGGATGATGCCGTTGG 41185 Query 72242 ATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATAT--TGCTAATTGATAG 72299 | | || || || ||| ||| ||||| | | || || || | ||| | |||| Sbjct 41186 ACGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTAGCTCGGATGTTGTGCATACTGAT-- 41243 Query 72300 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 72359 || || || || ||| || ||||| | || || |||| | || ||||| ||||| Sbjct 41244 GCCAATGCCTCCCGCCCACTTGGAGATGCACGCACACTGTTTCAGAGTGTCATAAATGCC 41303 Query 72360 CTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 72419 || ||| |||||| |||| | | || || ||||| ||| |||| ||| Sbjct 41304 TTCAATAGAGTCATCCTGCATGGCCAACAAGAAGCACGAAGACAATTGTGGACGTGGAGT 41363 Query 72420 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTA 72479 || ||||| || | || || | ||||| || || |||||| |||| || | ||| Sbjct 41364 ACCAGCATTGAACAGCGTGGGGGTGGCGTGGGTGAAGAATTTTTGCGACATGAGTTCGTA 41423 Query 72480 CGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACAT 72539 ||||||| || | | || | | | || || |||| || || ||||| | ||| Sbjct 41424 AGTCTCAAGTGCCGCCTTGATGTTCGTCTTGTGGATGCCTAGAGCCACGCGCATGATCAT 41483 Query 72540 ATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGT 72599 ||||| || | ||| || | ||| | | || | ||| | |||| || Sbjct 41484 CTGCTGGGGACGTTCCACCACTTTGCCGTGGACACGGAAGAGATAGCCCCTCTCCAGTGT 41543 Query 72600 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTT 72659 ||||| |||||||| | |||| ||||||||| || | ||||| |||| || |||| Sbjct 41544 CTTAAAGCCAAAATAATCGTATTCAAAGTCTCGGTCATGGATAATGGCCGAGTTCAGTTG 41603 Query 72660 ATCCTTAT 72667 || |||| Sbjct 41604 GTCTTTAT 41611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671115458450800