Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712645.1_202016-08- 24] 2,830 sequences; 37,002,228 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq2145 212 9e-50 seq2551 129 9e-25 seq769 120 5e-22 >seq2145 Length=220927 Score = 212 bits (234), Expect = 9e-50 Identities = 596/890 (67%), Gaps = 40/890 (4%) Strand=Plus/Minus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 ||||| |||||| | | || ||| | ||| | |||||||| ||||| ||||| ||| Sbjct 135275 CTGTTCCCCATCCAGGAGCACGACGTGTGGCAGATGTACAAGAAGGCGGAGGCCAGCTTC 135216 Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114 ||||| | |||||| | || || | ||||| | || |||| | | | || Sbjct 135215 TGGACTGCGGAAGAGCTGGACTTGGTACACGACCTCAAGGACTGGGGAAACC---TCACA 135159 Query 125115 GAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATC 125174 || | ||||| | || || |||| | |||||||||||||||| | ||||| ||| Sbjct 135158 GACAACGAGCGTCACTTCATCAAGCACGTCTTGGCCTTCTTTGCCGCCAGTGATGGCATC 135099 Query 125175 GTCAACGACAATCTGTTGACACGAT-TCTCTCAA-GAGTTGACCATT-CCAGAGGTGTCG 125231 || ||||| || || | || || | | ||| || | || | | || |||| ||| Sbjct 135098 GTGAACGAGAACTTG--GCCATGAACTTTAGCAATGAAGT-ACAAGTGCCTGAGGC-TCG 135043 Query 125232 T-GCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACT 125290 | |||| ||||| ||||| || ||||||||| | ||||| || ||||||| || Sbjct 135042 TTGCTTCTACGGCTTCCAGATTGCCATTGAGAACATCCACTCAGAGGTGTACTCGCTGCT 134983 Query 125291 GATTGACATGTACATTCGCGATCCGCAACGTAAA-----CACATGCTCTTTAACGCAATC 125345 ||||||| |||||| || ||| | ||| ||| |||| | ||||| Sbjct 134982 CATTGACACGTACATCAAGGA--CGCTGTGGAAAAGGACCACCTGCTGCGT---GCAATT 134928 Query 125346 GACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGAC 125405 || || | |||| | | || ||||| |||| | | | ||| ||| ||| Sbjct 134927 GAGACCATCCCGTGTGTGACCAAGAAGGCGAGTTGGGCGCTGAGATGGTGCGACC-CGAA 134869 Query 125406 AA-GTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTC 125464 | ||| || ||| | || | || |||||||||| || || ||||| |||||||| || Sbjct 134868 AGTGTCCTCATACCCGGAGCGTCTTCTGGCATTCGCAGCTGTGGAGGGAATCTTCTTCTC 134809 Query 125465 GGG-TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGC 125523 ||| | |||||| ||||||| |||||||||||||| || |||||||| || |||| Sbjct 134808 GGGCTCCTTTTGCT-CCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGAGCT 134750 Query 125524 ACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGT 125583 | |||||| | || ||| || || || | ||| |||||||| ||| ||| Sbjct 134749 TCTCCAACGAGCTCATCAGTCGTGATGAAGGTATGCACACAGACTTTGCTTGTCTGTTGT 134690 Query 125584 TTCGCAACTATCTGCGTCCCGAG-TGCAGATCCAGCGATGAAAAGGTCATCAACATTGTA 125642 | | | | ||| || || ||| | ||||| || | | ||| | Sbjct 134689 A-CTCGA--AGCTGGTGACCAAGCTGCCGGAGCAGCGT-------GTGCACGAGATTATC 134640 Query 125643 ACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTC-AGCATGAT 125701 || || |||| ||| ||||| ||||| | | ||| || || || || ||| |||| Sbjct 134639 CGTGACGCTGTGAAGATCGAACACGAGTTCGTGAGCGACTCGCTCCCAGTGGAGC-TGAT 134581 Query 125702 TGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTA 125761 |||||||||| ||| |||||| ||||||| ||||| |||||||| || || ||||| Sbjct 134580 CGGCATGAACTCGGCGCTCATGTGCCAGTACATTGAGTTCGTGGCAGACCGCCTGCTGTA 134521 Query 125762 CGAG-TTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCA 125820 | ||| | | | |||||| ||||||| |||||| || ||||| | ||| || | Sbjct 134520 TTCGCTTGGTGTGTC-CAAGATCTACAACGTCAAGAACCCGTTTGACTGGATGGACATGA 134462 Query 125821 TATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 | || ||| |||| ||||||||||| ||||||||| || |||||||| Sbjct 134461 TCTCTCTACAGGGCAAGACCAACTTCTTCGAGAAGCGTGTGGGCGAGTAC 134412 >seq2551 Length=89002 Score = 129 bits (142), Expect = 9e-25 Identities = 306/452 (68%), Gaps = 8/452 (2%) Strand=Plus/Minus Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126 || |||||||| |||||||| |||||||||||| | |||| || ||||||| || Sbjct 1195 GGAGATCTGGGACCAGTGTATGGATTCCAGTGGCGTCACTTTGGAGCCAAGTACACGGAT 1136 Query 70127 -TGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAA-TTGCAGACAATCATTGACACTC 70184 ||| | ||||||| | || ||||| || |||||| |||| || | || ||| | Sbjct 1135 ATGCATG-CAGACTACACTGGACAGGGAGTGGATCAACTTGCTGAGG-TGATCCACAAAC 1078 Query 70185 TCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGC 70244 | || || | || || | |||| || ||| | |||||||| || ||| | Sbjct 1077 TGCGCACGAACTCGACCGACCGTCGGATTGTGCTGTCTGCGTGGAATCCGGCGGATCTCA 1018 Query 70245 ACCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTTTTACTCGTACGATGGCAAA 70303 | | ||||| || || ||||| ||| ||||| | |||||||||| | |||||| | Sbjct 1017 ATGAGATGGCGCTGCCGCCGTGCCACATGTTTTG-TCAGTTTTACGTGGCGGATGGCGAG 959 Query 70304 TTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATT 70363 ||||| ||| ||||| ||| | || |||||||||||||| || || || ||||| Sbjct 958 TTGTCGTGCCAGATGTACCAGCGTTCGGCTGACATGGGCCTCGGCGTGCCGTTCAACATC 899 Query 70364 GCAAGCTATTCTATGTTGACGC-ACATGATTGCTCACATTACCGGCCTGAAAGCGCACGA 70422 || || ||| | | |||||| || || | || || | | || ||||| | ||| Sbjct 898 GCCAGTTATGCGCTACTGACGCGACTTG-TGGCCCAAGTGGCTGGTTTGAAACCTGGCGA 840 Query 70423 GTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATTAAAGGT 70482 || | |||| |||||||| || ||||| || | || ||| | ||||| | || Sbjct 839 ATTTATCCACATTATTGGCGATGCACACGTATACCTGAACCACGTAGAGCCGCTTCAGAA 780 Query 70483 GCAACTCGAACGGGAGCCGAGACCTTTTCCCA 70514 ||| || | ||| ||| |||| || |||| Sbjct 779 GCAGCTAGCACGCACCCCGCGACCATTCCCCA 748 >seq769 Length=43651 Score = 120 bits (132), Expect = 5e-22 Identities = 315/474 (66%), Gaps = 14/474 (3%) Strand=Plus/Minus Query 96916 TGGAACCTTGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTG 96975 ||||||| |||||||| || || ||||| || | || ||||||| ||| ||| | Sbjct 41089 TGGAACCGTGGCACGCTGATGTGTTTGAGTTCTTGGATTTGCGCAAGAACCATGG---TA 41033 Query 96976 AAGAG--GCAC-GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGA 97032 | ||| |||| | || | |||||||| ||||| || |||||||| ||| ||||||||| Sbjct 41032 ACGAGCTGCACCGTGCACGTGACTTGTTCTATGCTCTGTGGGTGCCGGATCTGTTCATGA 40973 Query 97033 AGCGCGTCAACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGT 97092 |||| || | | | |||| | ||||| | | || ||| || | | |||||||| | Sbjct 40972 AGCGTGTGGAGGCCAATGGCAAGTGGAGTTTGTTCTGTCCCAACGAGGCTCCCGGTCTAT 40913 Query 97093 CCGATTGCTGGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCG-A 97151 ||| |||||||| || ||||| ||| | || | ||||||| || ||||| Sbjct 40912 ACGAGTGCTGGGGAGAGGAGTTCGAGACGCTGTTTGAGAAGTACGAGCGTGAAGGCCGCG 40853 Query 97152 TACGTGAGACGAGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAG 97211 || |||| | || |||| | | | |||||| || || || || ||| | ||| Sbjct 40852 CCCGCAAGAC-AATCAATGCTCAACAGCTGTGGTTCGCTATTCTGGACGCGCAGATTGAG 40794 Query 97212 ACTGGAACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCAC 97271 || || || | ||| || |||||||| ||| || ||||| |||||| | || Sbjct 40793 ACGGGCGTGCCTTTCATGCTGTACAAGGACGCCGCCAACCGCAAGTCCAACCAGCAGAAC 40734 Query 97272 TTGGGCACCATCAAGGGCTC---CAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCG 97328 | ||||| || |||| ||| ||||| ||| | | |||||| | || || Sbjct 40733 CTCGGCACGAT---TCGCTCGAGCAACTTGTGCTGTGAAGTGATGGAGTACACGTCGCCC 40677 Query 97329 GACGAGACGGCAGTTTGCGTTCTGGCATCGGTCAATCTGCCCAAGTTTGTAGAG 97382 || || ||| || ||| |||| || || || |||||||| || ||| Sbjct 40676 GATGAAGTGGCCGTGTGCAACTTGGCGTCCGTGGCGCTCCCCAAGTTCGTTGAG 40623 Score = 93.3 bits (102), Expect = 6e-14 Identities = 126/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 98040 TACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATGGCTGCCGACAGAGGT 98099 |||||||| || |||||||| | ||| || | | || || |||| || | ||| Sbjct 39953 TACAAGACGGTGTGGGAGATCAAGCAGAAGTCGATTCTGGACCTGTCTGCGGATCGTGGT 39894 Query 98100 GTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTCGT 98159 | |||||| |||||||| ||| | || | || | ||||| || || | || Sbjct 39893 GCCTACATCTGTCAGAGTCAGTCGCTGAACATTCACATCGCCGAACCGACAAAAAGCAAG 39834 Query 98160 ATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTA 98215 | || ||||| ||||||||||| ||||| ||||| |||||||||||||||||||| Sbjct 39833 CTTACATCGATGCACTTTTACGCGTGGAAGAAGGGGCTCAAGACGGGCATGTACTA 39778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741032985030800