Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712645.1_202016-08- 24] 2,830 sequences; 37,002,228 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq176 134 1e-26 >seq176 Length=38630 Score = 134 bits (148), Expect = 1e-26 Identities = 239/347 (69%), Gaps = 4/347 (1%) Strand=Plus/Minus Query 5500 CACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTC 5559 ||| || ||||| ||||| || || | || | | | || ||||| | |||||||| Sbjct 21791 CACTCCAGTGGAGCCGAAGCCTCCAGTACCACGTGCTGTCTCGTCGATCTCTGCCACCTC 21732 Query 5560 TTCCACATCGGGGAACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTT 5619 || | || ||| || | ||| |||||| || || | |||||| || ||| Sbjct 21731 CTCGATCTCCGGGTACTCGATTTTCTCTAAGATCAATTGAGCCACTCGGTCTCCACGCTT 21672 Query 5620 TACCTCGAAATCGTTGTGGCCGAA--GTTGAACAGCACCACGCCCACGTTGCCGCGGTAG 5677 || ||| || | | | ||| ||||||||| | ||||||||| || ||||||||| Sbjct 21671 GACTGGGAAGTCTTCG--GTCGAGTGGTTGAACAGGATCACGCCCACATTCCCGCGGTAG 21614 Query 5678 TCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGG 5737 |||||||| || ||||| ||||| ||||||||| | ||||| || || || ||||| Sbjct 21613 TCGGCGTCAATGACGCCTGCGCCAGTGTCGATGAACTTCTTGAGTGCGAGACCAGAGCGA 21554 Query 5738 GGAGCCACGCGGCCGTAGCACCCATCGGGAAGCTGTATCTGCAGGTCCGTGAACACCACT 5797 || || || ||| ||||||| || || || || || || |||||| |||| | Sbjct 21553 GGCGCTACACGGGCGTAGCAGCCGTCTGGTAGAGCGATGGCCAAGTCCGTTTTGACCAGT 21494 Query 5798 CGCCGACCGCCCGCAGGGACGATGCAGTCGCAAGCGCTGCAGAGGTC 5844 | || || ||||||| || | |||| |||||||| ||||||| Sbjct 21493 CCTTTGCCTCCAGCAGGGATGACGGCGTCGTAAGCGCTGGAGAGGTC 21447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430039567154960