Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712645.1_202016-08- 24] 2,830 sequences; 37,002,228 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq2557 107 2e-18 seq1410 86.0 5e-12 >seq2557 Length=41672 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 |||||||| |||||| || |||||||| || || | || || ||||||||||||| Sbjct 14078 TGAAGTGTAGACTCCTTCTGGATGTTGTAGTC-GCTCAGCGTGCGACCGTCCTCCAGCTG 14020 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| || | || | ||||||||| || ||| | | ||||||||| ||||| Sbjct 14019 CTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGGATTTT 13960 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 |||||| | | | || | |||| || |||| |||| || || || || || || Sbjct 13959 CTGCTTCACATTGTCGATTGAGTCGGAAGGCTCCACGTCGAGCGTGATAGTCTTGCCAGT 13900 Query 48703 GAGAGTTTTCACAAAAATCTGCATCGTGTCTTG 48735 || || |||||||| ||||||||| || |||| Sbjct 13899 CAGTGTCTTCACAAAGATCTGCATCTTGGCTTG 13867 Score = 105 bits (116), Expect = 6e-18 Identities = 152/212 (72%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 |||||||| |||||| || |||||||| || || | || || ||||||||||||| Sbjct 9813 TGAAGTGTAGACTCCTTCTGGATGTTGTAGTC-GCTCAGCGTGCGACCGTCCTCCAGCTG 9871 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| || | || | ||||||||| || ||| | | ||||||||| ||||| Sbjct 9872 CTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGGATTTT 9931 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 |||||| | | | || | |||| || |||| |||| || || || || || || Sbjct 9932 CTGCTTCACATTGTCGATCGAGTCGGAAGGCTCCACGTCGAGCGTGATAGTCTTGCCAGT 9991 Query 48703 GAGAGTTTTCACAAAAATCTGCATCGTGTCTT 48734 || || |||||||| ||||||||| || ||| Sbjct 9992 CAGTGTCTTCACAAAGATCTGCATCTTGGCTT 10023 Score = 100 bits (110), Expect = 2e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 |||||||| |||||| || |||||||| || || | || || ||||||||||||| Sbjct 14306 TGAAGTGTAGACTCCTTCTGGATGTTGTAGTC-GCTCAGCGTGCGACCGTCCTCCAGCTG 14248 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| || | || | ||||||||| || ||| | | ||||||||| ||||| Sbjct 14247 CTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGGATTTT 14188 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 |||||| | | | || | |||| || |||| |||| || || || || || || Sbjct 14187 CTGCTTCACATTGTCGATCGAGTCGGAAGGCTCCACGTCGAGCGTGATAGTCTTGCCAGT 14128 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 || || |||||||| |||||||| Sbjct 14127 CAGTGTCTTCACAAAGATCTGCAT 14104 >seq1410 Length=10983 Score = 86.0 bits (94), Expect = 5e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 48537 CCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAA 48596 |||| || |||||||| || | || || ||||||| |||||||| ||| || | | Sbjct 2455 CCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 2514 Query 48597 TTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACG 48656 | | ||||||||| || || | | ||||||||| ||||||||||||| | Sbjct 2515 TCAGACGCTGCTGGTCAGGTGGAATTCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGT 2574 Query 48657 CTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAA 48716 | ||| | || | | |||| |||| || ||||| || || || || || ||||||| Sbjct 2575 CAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAA 2634 Query 48717 AAATCTGCAT 48726 | |||||||| Sbjct 2635 AGATCTGCAT 2644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421236670782830