Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712645.1_202016-08- 24] 2,830 sequences; 37,002,228 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq2557 107 2e-18 seq1410 84.2 2e-11 >seq2557 Length=41672 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||| ||| | ||||| ||||| || | ||| || ||||||| ||| ||||| Sbjct 14313 CACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTC 14254 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 |||||| || ||| | ||||| | | ||||| || || || || ||||| ||||| | Sbjct 14253 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTG 14194 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||||| ||| || | ||| | ||| | | || ||||| | |||||| || || Sbjct 14193 GATTTTCTGCTTCACATTGTCGATCGAGTCGGAAGGCTCCACGTCGAGCGTGATAGTCTT 14134 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||||| || || ||||||||||||||||||| Sbjct 14133 GCCAGTCAGTGTCTTCACAAAGATCTGCATGC 14102 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||| ||| | ||||| ||||| || | ||| || ||||||| ||| ||||| Sbjct 9806 CACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTC 9865 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 |||||| || ||| | ||||| | | ||||| || || || || ||||| ||||| | Sbjct 9866 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTG 9925 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||||| ||| || | ||| | ||| | | || ||||| | |||||| || || Sbjct 9926 GATTTTCTGCTTCACATTGTCGATCGAGTCGGAAGGCTCCACGTCGAGCGTGATAGTCTT 9985 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || || ||||||||||||||||| Sbjct 9986 GCCAGTCAGTGTCTTCACAAAGATCTGCAT 10015 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||| ||| | ||||| ||||| || | ||| || ||||||| ||| ||||| Sbjct 14085 CACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTC 14026 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 |||||| || ||| | ||||| | | ||||| || || || || ||||| ||||| | Sbjct 14025 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTG 13966 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||||| ||| || | ||| | ||| | | || ||||| | |||||| || || Sbjct 13965 GATTTTCTGCTTCACATTGTCGATTGAGTCGGAAGGCTCCACGTCGAGCGTGATAGTCTT 13906 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || || ||||||||||||||||| Sbjct 13905 GCCAGTCAGTGTCTTCACAAAGATCTGCAT 13876 >seq1410 Length=10983 Score = 84.2 bits (92), Expect = 2e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| || ||| | ||||| | | ||||| || || ||||| || || ||| Sbjct 2490 TCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGTGGAATTCCCTCCTTG 2549 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||||| |||||| | | | |||| | | || ||||| | ||||||| Sbjct 2550 TCCTGGATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCACGTCGAGCGTGATG 2609 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTT 95011 || || || || || || |||||||||||||||||| || Sbjct 2610 GTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATGATT 2648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448275341698800