Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712645.1_202016-08- 24] 2,830 sequences; 37,002,228 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq2145 150 2e-31 seq769 104 3e-17 >seq2145 Length=220927 Score = 150 bits (166), Expect = 2e-31 Identities = 387/585 (66%), Gaps = 7/585 (1%) Strand=Plus/Plus Query 33296 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 33355 ||| || ||| || || || ||||| ||| || || | ||| || || |||||||| | Sbjct 134690 ACAACAGACAAGCAAAGTCTGTGTGCATACCTTCATCACGACTGATGAGCTCGTTGGAGA 134749 Query 33356 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAG 33415 | | || || ||||| || |||||||| || ||||| || ||||| || || || | Sbjct 134750 AGCTCAGACCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGCAAAAGGAGCCCG 134809 Query 33416 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG-CGCTG 33474 | ||||||||||| || || || || || || | ||| | ||| || || | || Sbjct 134810 AGAAGAAGATTCCCTCCACAGCTGCGAATGCCAGAAGACGCTCCGGGTATGAGGACACTT 134869 Query 33475 TCATGT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 33532 || || ||| | | |||||| |||||||| | ||||| || || || || | Sbjct 134870 TCGGGTCGCACCATCTCAGCGCCCAACTCGCCTTCTTGGTCACACACGGGATGGTCTCAA 134929 Query 33533 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 33592 | ||| | || | || ||||| | || || | || || || || | || Sbjct 134930 TTGCACGCAGCAGGTGGTCCTTTTCCACAGCGTCCTTGATGTACGTGTCAATGAGCAGCG 134989 Query 33593 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 33652 |||| || || || ||||| |||||||| ||||| || |||||||| || | ||||| Sbjct 134990 AGTACACCTCTGAGTGGATGTTCTCAATGGCAATCTGGAAGCCGTAGAAGCAACGAGCCT 135049 Query 33653 CGGTAATCTGTACTTCTGTACAAAATCGTTC--CGCCAAATTTTCATTCACTATTCCGTC 33710 | | | |||||||| | | ||| |||| ||||| || || ||||| || || || Sbjct 135050 CAGGCACTTGTACTTCATTGCTAAA--GTTCATGGCCAAGTTCTCGTTCACGATGCCATC 135107 Query 33711 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTT 33770 |||||| ||||| || ||||| || || || || || | |||| ||| || || Sbjct 135108 ACTGGCGGCAAAGAAGGCCAAGACGTGCTTGATGAAGTGACGCTCGTTGTCTGTGAGGTT 135167 Query 33771 ATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTC 33830 ||| || |||| || | | || | |||||| | ||||| || ||||| Sbjct 135168 TCCCCAGTCCTTGAGGTCGTGTACCAAGTCCAGCTCTTCCGCAGTCCAGAAGCTGGCCTC 135227 Query 33831 TGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAA 33875 ||||| || ||||| | ||| | ||| | | ||||| ||||| Sbjct 135228 CGCCTTCTTGTACATCTGCCACACGTCGTGCTCCTGGATGGGGAA 135272 >seq769 Length=43651 Score = 104 bits (114), Expect = 3e-17 Identities = 462/727 (64%), Gaps = 6/727 (1%) Strand=Plus/Plus Query 63138 TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 63197 |||||||| |||||||| | || | || ||| || | ||||| | ||| | Sbjct 40888 TCGAACTCCTCTCCCCAGCACTCGTATAGACCGGGAGCCTCGTTGGGACAGAACAAACTC 40947 Query 63198 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AA 63256 |||| || | ||| ||| || ||||| || ||||| || | ||| ||||| ||| || Sbjct 40948 CACTTGCCATTGGCCTCCACACGCTTCATGAACAGATCCGGCACCCACAGAGC-ATAGAA 41006 Query 63257 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63316 | || | | | || |||||| || ||||| | ||| | |||| | | Sbjct 41007 CAAGTCACGTGCACGGTGCAGCTCGTTACCATGGTTCTTGCGCAAATCCAAGAACTCAAA 41066 Query 63317 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63376 | ||||| ||||||||||||| || || || | ||| ||||| ||| || Sbjct 41067 CACATCAGCGTGCCACGGTTCCAGATAAATCGCAAATGATCCCTTGCGTTTACCTCCACC 41126 Query 63377 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGA 63436 ||| || | ||||| || || | ||| | |||| || ||| || || || ||||| || Sbjct 41127 CTGGTCCACGTATCGTGCCGTATCGTTAAACACTCGCAGCATGGGGATGATGCCGTTGGA 41186 Query 63437 TATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATAT--TACTAATTGATAGA 63494 || || || ||| ||| ||||| | | || || || | | | | |||| Sbjct 41187 CGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTAGCTCGGATGTTGTGCATACTGAT--G 41244 Query 63495 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCC 63554 || || || || ||| || ||||| | || || |||| | |||||||| || || Sbjct 41245 CCAATGCCTCCCGCCCACTTGGAGATGCACGCACACTGTTTCAGAGTGTCATAAATGCCT 41304 Query 63555 TCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 63614 || || ||||| |||| | | || || ||||| ||| |||| ||| Sbjct 41305 TCAATAGAGTCATCCTGCATGGCCAACAAGAAGCACGAAGACAATTGTGGACGTGGAGTA 41364 Query 63615 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTAC 63674 || ||||| || | || || | ||||| || || |||||| || | || | ||| Sbjct 41365 CCAGCATTGAACAGCGTGGGGGTGGCGTGGGTGAAGAATTTTTGCGACATGAGTTCGTAA 41424 Query 63675 GTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATG 63734 ||||||| || | | || | | | || || |||| || || ||||| | ||| Sbjct 41425 GTCTCAAGTGCCGCCTTGATGTTCGTCTTGTGGATGCCTAGAGCCACGCGCATGATCATC 41484 Query 63735 TGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTT 63794 ||||| || | ||| || | ||| || | || | ||| | |||| || Sbjct 41485 TGCTGGGGACGTTCCACCACTTTGCCGTGGACACGGAAGAGATAGCCCCTCTCCAGTGTC 41544 Query 63795 TTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTA 63854 ||||| |||||||| | |||| ||||||||| || | ||||| ||||||| |||| Sbjct 41545 TTAAAGCCAAAATAATCGTATTCAAAGTCTCGGTCATGGATAATGGCCGAGTTCAGTTGG 41604 Query 63855 TCCTTAT 63861 || |||| Sbjct 41605 TCTTTAT 41611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622925163242800