Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712645.1_202016-08- 24] 2,830 sequences; 37,002,228 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq769 309 8e-79 seq2145 84.2 6e-11 >seq769 Length=43651 Score = 309 bits (342), Expect = 8e-79 Identities = 871/1333 (65%), Gaps = 7/1333 (1%) Strand=Plus/Minus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| |||||||| || || ||| ||||||||| |||| |||||| ||||||| Sbjct 41399 TTCACCCACGCCACCCCCACGCTGTTCAATGCTGGTACTCCACGTCCACAATTGTCTTCG 41340 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| | | ||| |||| || || || || || || | |||||| || || | Sbjct 41339 TGCTTCTTGTTGGCCATGCAGGATGACTCTATTGAAGGCATTTATGACACTCTGAAACAG 41280 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA 363726 ||||| || |||||| || || || ||||| | || ||||| | || || Sbjct 41279 TGTGCGTGCATCTCCAAGTGGGCGGGAGGCATTGGCATCAGTATGCACAACATCCGAGCT 41220 Query 363727 CAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGT 363786 ||||| ||||| |||||||| || | || || || | | |||||||| || Sbjct 41219 ACTAACAGCTACATCCGCGGCACGAACGGCTCGTCCAACGGCATCATCCCCATGCTGCGA 41160 Query 363787 GTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTT 363846 |||||| || |||| || | ||||| |||||||||||||| || ||||| || | ||| Sbjct 41159 GTGTTTAACGATACGGCACGATACGTGGACCAGGGTGGAGGTAAACGCAAGGGATCATTT 41100 Query 363847 GCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAAC 363906 || || ||||| || || || || ||| | |||||||| | || | || || ||| Sbjct 41099 GCGATTTATCTGGAACCGTGGCACGCTGATGTGTTTGAGTTCTTGGATTTGCGCAAGAAC 41040 Query 363907 ACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCAT 363966 || || ||| ||||||||||| |||||||||| || ||||| | || | Sbjct 41039 CATGGTAACGAGCTGCACCGTGCACGTGACTTGTTCTATGCTCTGTGGGTGCCGGATCTG 40980 Query 363967 TTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCA 364026 || |||||||| |||||||| | || ||| | || || || |||| ||| Sbjct 40979 TTCATGAAGCGTGTGGAGGCCAATGGCAAGTGGAGTTTGTTCTGTCCCAACGAGGCTCCC 40920 Query 364027 GGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAG 364086 ||||| | ||| ||||| || || | | | || | || ||||| || || Sbjct 40919 GGTCTATACGAGTGCTGGGGAGAGGAGTTCGAGACGCTGTTTGAGAAGTACGAGCGTGAA 40860 Query 364087 GGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAG 364146 || || || |||||||| || || |||| ||||| || || |||| ||||| Sbjct 40859 GGCCGCGCCCGCAAGACAATCAATGCTCAACAGCTGTGGTTCGCTATTCTGGACGCGCAG 40800 Query 364147 ATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAG 364206 |||||||| || || | ||| ||||||| || | ||||||||||||||||||| Sbjct 40799 ATTGAGACGGGCGTGCCTTTCATGCTGTACAAGGACGCCGCCAACCGCAAGTCCAACCAG 40740 Query 364207 CAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCT 364266 ||| |||| || || |||| ||||||| | || || | || || ||||| | Sbjct 40739 CAGAACCTCGGCACGATTCGCTCGAGCAACTTGTGCTGTGAAGTGATGGAGTACACGTCG 40680 Query 364267 CCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAAGAT 364326 ||||| || ||||| || ||| | ||||| | ||||| || ||| || | | Sbjct 40679 CCCGATGAAGTGGCCGTGTGCAACTTGGCGTCCGTGGCGCTCCCCAAGTTCGTTGAGAAC 40620 Query 364327 GGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCT-ACTTGCAATCTCGA 364385 | || || || || | || ||||| || | | || | || |||| || | Sbjct 40619 GCCGTGTTCAACTACAAGAAGCTGTATGAGGTCGTC-AAGGTGATCACACGCAACCTGAA 40561 Query 364386 CAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCA 364445 |||||| |||||| || || || || || ||| || ||| || |||||||| Sbjct 40560 CAAGGTCATCGACGTCAACTACTACCCCGTTATTGAGGCTCGCAATTCCAACATGCGTCA 40501 Query 364446 TCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGC 364505 || || ||||| ||||||| |||||||| || |||| ||| || | | | | || Sbjct 40500 CCGTCCTGTTGGTATTGGTGTGCAGGGCCTTGCGGACGCTTTCATCCTCATGGACTTTGC 40441 Query 364506 ATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGC 364565 || || || || || |||| || || ||| | ||||| || || || || | || Sbjct 40440 GTTCGAGAGTCCGGAGGCGCGTGAGCTCAACAAGAATATCTTCGAGACCATCTACTACGC 40381 Query 364566 CGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGG 364625 | ||| | ||| || |||| | ||| |||| |||| |||| Sbjct 40380 TTCTATGGAGACGTCGATGGAACTGGCCACGGAATTGGGCCCGTACGAGACTTTCCAGGG 40321 Query 364626 GTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCG 364685 || ||| |||| | |||||||| ||| | ||| | |||||||| || |||| Sbjct 40320 TTCGCCTGCCAGCAAGGGTATCTTCCAGTTCGATATGTGGGACGTCACGCCTTC-CTCCG 40262 Query 364686 ----ATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAACTCCC 364741 ||| |||||| | |||| || || ||| | || ||||| || | Sbjct 40261 GTCTGTGGGACTGGGCTGCGCTTAAGGAGAAGGTGGTCAAGAACGGCCTGCGCAATTCGC 40202 Query 364742 TCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCT 364801 || | ||||| ||||| ||||| ||||| |||||||||||||| || ||||||| Sbjct 40201 TCCTGGTCGCGCCGATGCCGACGGCGTCTACGGCACAGATCCTCGGTAATAACGAGTCTA 40142 Query 364802 TCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAG 364861 |||||||||| || ||| | || ||||| || ||| | ||||| ||| | | | Sbjct 40141 TCGAACCGTTCACCTCCAACATGTACAACCGCCGCGTGCTTGCGGGAGAGTTTACCATCG 40082 Query 364862 TTAATAAGTACCT 364874 | || |||||||| Sbjct 40081 TGAACAAGTACCT 40069 >seq2145 Length=220927 Score = 84.2 bits (92), Expect = 6e-11 Identities = 148/214 (69%), Gaps = 5/214 (2%) Strand=Plus/Minus Query 22438 AATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACGT----TCATTCGCGGAACG 22493 || ||||| ||||||||||| |||| || ||| || |||| | |||| || Sbjct 134906 AAGAAGGCGAGTTGGGCGCTGAGATGG-TGCGACCCGAAAGTGTCCTCATACCCGGAGCG 134848 Query 22494 TCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTT 22553 |||| | ||||| || | || || || || ||||| || || | ||||| | ||||| Sbjct 134847 TCTTCTGGCATTCGCAGCTGTGGAGGGAATCTTCTTCTCGGGCTCCTTTTGCTCCATCTT 134788 Query 22554 TTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCG 22613 ||||| || || |||| | ||||| ||||| | || || || ||| | || || || Sbjct 134787 CTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGAGCTTCTCCAACGAGCTCATCAGTCG 134728 Query 22614 AGATGAGGGTCTTCATACCGATTTTGCGTGTATG 22647 ||||| ||| | || || || ||||| ||| || Sbjct 134727 TGATGAAGGTATGCACACAGACTTTGCTTGTCTG 134694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303306341213060