Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712645.1_202016-08- 24] 2,830 sequences; 37,002,228 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq769 163 3e-35 seq2557 141 9e-29 seq1410 113 4e-20 seq442 96.9 3e-15 >seq769 Length=43651 Score = 163 bits (180), Expect = 3e-35 Identities = 740/1149 (64%), Gaps = 42/1149 (4%) Strand=Plus/Plus Query 145051 GTACTGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGT 145110 ||||| || |||| |||||| || || | ||| || || |||| ||| || || Sbjct 40071 GTACTTGTTCACGATGGTAAACTCTCCCGCAAGCACGCGGCGGTTGTACATGTTGGAGGT 40130 Query 145111 GAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTA 145170 ||| ||||| | |||||||||||| || ||||| || || || | || || ||||| Sbjct 40131 GAACGGTTCGATAGACTCGTTATTACCGAGGATCTGTGCCGTAGACGCCGTCGGCATCGG 40190 Query 145171 CGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCA 145230 ||| |||| | |||||||||||||||| ||| | | ||||| |||| | |||| Sbjct 40191 CGCGACCAGGAGCGAATTGCGCAGGCCGTTCTTGACCACCTTCTCCTTAAGCGCAGCCCA 40250 Query 145231 ATCCCATAG---CGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCT 145287 ||||| || || | ||| | ||||||||||| ||| |||| || || |||| ||| Sbjct 40251 GTCCCACAGACCGGAGGAAGGCGTGACGTCCCACATATCGAACTGGAAGATACCCTTGCT 40310 Query 145288 GGC-GGGGCTGCCTTGAAAGGAACTGTAACTGCCCCAAGT-TTTGGCGAGCTCGCAAC-T 145344 ||| || | ||| ||||| || || | ||||| | |||| || || || | Sbjct 40311 GGCAGGCGAACCCTGGAAAG--TCTCGTACGGGCCCAATTCCGTGGCCAGTTC-CATCGA 40367 Query 145345 CGCCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTC 145404 || ||||| || || | || || |||||| || | | |||||||| ||| || Sbjct 40368 CGTCTCCATAGAAGCGTAGTAGATGGTCTCGAAGATATTCTTGTTGAGCTCACGCGCCTC 40427 Query 145405 ATCGCTCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCAC 145464 |||||| ||| | | || || | ||||| || || || ||||| | || | Sbjct 40428 CGGACTCTCGAACGCAAAGTCCATGAGGATGAAAGCGTCCGCAAGGCCCTGCACACCAAT 40487 Query 145465 GCCGATGGGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATA---GGATA-TCGAT 145520 || | || || || ||||||| | | || ||| ||| || || | | | Sbjct 40488 ACCAACAGGACGGTGACGCATGTTGGAATTGCGAGC---CTCAATAACGGGGTAGTAGTT 40544 Query 145521 TACGGTCGATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTT 145580 || |||||| | || |||| ||| || | ||||| | | || ||| | Sbjct 40545 GAC-GTCGATGACCTTGTTCAGGTTGCGTGTGATCACCTTGACGACCTCATACAGCTTCT 40603 Query 145581 CAAAGTCAAACCGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAAT 145640 ||| ||| || | ||||||| | | || || | |||||||| | Sbjct 40604 TGTAGTTGAACACGGCGTTCTCAACGA------ACTTGGGGAGCGCCACGGACGCCAAGT 40657 Query 145641 TACAAACTGCCGTCTCCTC-GGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTA 145699 | || || ||| || || |||| || |||| | | | || |||||| ||||| Sbjct 40658 TGCACACGGCCACTTCATCGGGCGACG-TGTACTCCATCACTTCACAGCACAAGTTGCTC 40716 Query 145700 CATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGC 145759 | || || || || || ||||| || || | |||| ||||||||||| ||| Sbjct 40717 GAGCGAATCGTGCCGAGGTTCTGCTGGTTGGACTTGCGGTTGGCGGCGTCCTTGTACAGC 40776 Query 145760 ATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGATA--AAACGGTGCAAGTCCTGCG 145817 ||| | || |||| ||||| | ||||| |||| ||| ||| || | || | Sbjct 40777 ATGAAAGGCACGCCCGTCTCAATCTGCGCGTCCAGAATAGCGAAC--CACAGCTGTTGAG 40834 Query 145818 CACGCACCTGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACG 145877 || | || || |||||| || ||||| ||| | ||| ||| ||| Sbjct 40835 CATTGATTGTCTTGCGGGCGCGGCCTTCACGCTCGTACTTCTCAAACAGCGTCTCGAACT 40894 Query 145878 CGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGC 145937 | || |||| ||| | || |||||| || ||||||||| | || ||| || Sbjct 40895 CCTCTCCCCAGCACTCGTATAGACCGGGAGCCTCGTTGGGACAGAACAAACTCCACTTGC 40954 Query 145938 CGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGT--C 145995 | ||||| | || |||| ||| |||| ||| ||||||||||| || || | ||||| | Sbjct 40955 CATTGGCCTCCACACGCTTCATGAACAGATCCGGCACCCACAGAGCATAGAACAAGTCAC 41014 Query 145996 GCGCGCTTTGCAATCCTCAGCACCCATGTTTC--GCTTCAAAT-TAAGCACACTATAGAT 146052 | || | |||| ||| | ||||| ||| || ||||| ||| || | | | | Sbjct 41015 GTGCACGGTGCA--GCTC-GTTACCATGGTTCTTGC-GCAAATCCAAGAACTC-AAACAC 41069 Query 146053 GTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGTTT---GCCACCCTG 146109 || |||||||||||||| | ||| | || | | ||| || ||||| |||||||| Sbjct 41070 ATCAGCGTGCCACGGTTCCAGATAAATCGCAAATGATCCCTTGCGTTTACCTCCACCCTG 41129 Query 146110 GTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTAC 146169 |||||||| ||| || | | |||||| || |||| |||||| || |||| ||| Sbjct 41130 GTCCACGTATCGTGCCGTATCGTTAAACACTCGCAGCATGGGGATGATGCCGTTGGACGA 41189 Query 146170 GCCGTTCGT 146178 ||||||||| Sbjct 41190 GCCGTTCGT 41198 >seq2557 Length=41672 Score = 141 bits (156), Expect = 9e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| || ||||| | || | || |||||||| || |||||||| ||||| Sbjct 14103 GCCACCACGCAGGCGAAGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCT 14044 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| |||||| ||||||||||| ||| |||| | |||||||||||| || || Sbjct 14043 CAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGG 13984 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| ||||| ||||| |||||||||||| | | || | | |||| | ||| | Sbjct 13983 GATGCCTTCCTTGTCTTGGATTTTCTGCTTCACATTGTCGATTGAGTCGGAAGGCTCCAC 13924 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||||| || | || || || || || || || || || |||||||| Sbjct 13923 GTCGAGCGTGATAGTCTTGCCAGTCAGTGTCTTCACAAAGATCTGCAT 13876 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| ||||| | || | || |||||||| || |||||||| |||||| Sbjct 14330 CCGCCACGAAGACGAAGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTC 14271 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| | |||||||||||| || ||| Sbjct 14270 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 14211 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| |||||||||||| | | || | | |||| | ||| | | Sbjct 14210 ATGCCTTCCTTGTCTTGGATTTTCTGCTTCACATTGTCGATCGAGTCGGAAGGCTCCACG 14151 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| || | || || || || || || || || || ||||||||| Sbjct 14150 TCGAGCGTGATAGTCTTGCCAGTCAGTGTCTTCACAAAGATCTGCATG 14103 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| ||||| | || | || |||||||| || |||||||| |||||| Sbjct 9789 CCGCCACGAAGACGAAGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTC 9848 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| | |||||||||||| || ||| Sbjct 9849 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 9908 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| |||||||||||| | | || | | |||| | ||| | | Sbjct 9909 ATGCCTTCCTTGTCTTGGATTTTCTGCTTCACATTGTCGATCGAGTCGGAAGGCTCCACG 9968 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | || || || || || || || || || |||||||| Sbjct 9969 TCGAGCGTGATAGTCTTGCCAGTCAGTGTCTTCACAAAGATCTGCAT 10015 >seq1410 Length=10983 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| || |||||||| || || ||||| |||||| ||||||||||| ||| ||| Sbjct 2455 CCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 2514 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | | |||||||||||| || || ||||| || ||||| |||||||||||||| | | Sbjct 2515 TCAGACGCTGCTGGTCAGGTGGAATTCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGT 2574 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | | || | | ||| | ||||| || | ||| || || || || || || || | Sbjct 2575 CAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAA 2634 Query 131225 AAATCTGCATGA 131236 | |||||||||| Sbjct 2635 AGATCTGCATGA 2646 >seq442 Length=77766 Score = 96.9 bits (106), Expect = 3e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||||||||| | || | || |||||| || |||||||| || | Sbjct 69838 CCACCACGCAGACGCAGCACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAC 69779 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| | |||||||||||| || ||| Sbjct 69778 AGAGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGG 69719 Query 131128 ATTCCT 131133 |||||| Sbjct 69718 ATTCCT 69713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471996102547200