Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712645.1_202016-08- 24] 2,830 sequences; 37,002,228 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq2145 221 2e-52 seq2096 170 4e-37 seq1704 102 2e-16 seq1577 84.2 4e-11 >seq2145 Length=220927 Score = 221 bits (244), Expect = 2e-52 Identities = 576/862 (67%), Gaps = 31/862 (4%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||||| |||||||| | ||||| |||| || ||||| || Sbjct 134431 TCGAAGAAGTTGGTCTTGCCCTGTAGAGAGATCATGTCCATCCAGTCAAACGGGTTCTTG 134490 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGC-TACGAAGATGCGGTCTGCCACAAACTCCAG 251681 | ||||| ||||| ||||| | ||| | | |||||||||||| ||||| | Sbjct 134491 ACGTTGTAGATCTTGGACACACCAAGCGAATAC-AGCAGGCGGTCTGCCACGAACTCAAT 134549 Query 251682 ATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATA-CGACAAGGA---ATTGCCTCAC 251737 ||||| | ||| || | ||||||||||| |||| | || ||| | | ||||| Sbjct 134550 GTACTGGCACATGAGCGCCGAGTTCATGCCGATCAGCTCCACTGGGAGCGAGTCGCTCAC 134609 Query 251738 AGATGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCAC---CTGTGCCA 251794 ||| || | |||| | || || || | ||| | | ||| ||| || Sbjct 134610 ----GAACTCGTGTTCGATCTTCACAGCGTCACGGATAATCTCGTGCACACGCTGCTCCG 134665 Query 251795 GAGACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCT 251854 | ||||||| || ||||||| ||||||| || |||| | | ||||| ||| | Sbjct 134666 G---CAGCTTGGTCACCAGCTTCGAGTACAACAGACAAGCAAAGTCTGTGTGCATACCTT 134722 Query 251855 CGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGA 251914 | || |||||||||| ||||||||| | | ||| |||||||| | ||||| ||| ||| Sbjct 134723 CATCACGACTGATGAGCTCGTTGGAGAAGCTCAGACCAGGCATGAGACCACGCTTCTTGA 134782 Query 251915 GCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAA 251974 |||||||||| | ||||||||| || ||||| | | ||||| ||| | |||| | Sbjct 134783 GCCAGAAGATGGAGCAAAAGGAGCCCGAGAAGAAGATTCCCTCCACAGCTGCGAATGCCA 134842 Query 251975 CAAGGCGCTCAGCAAACG-----ACTTGTCCTGCGACAAGAACTTCTGTGCCCATGCTGC 252029 ||| ||||| | | | |||| || | || | | || | ||||| || Sbjct 134843 GAAGACGCTCCGGGTATGAGGACACTT-TCGGGTCGCACCATC-TCAGCGCCCAACTCGC 134900 Query 252030 CTTCTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATC 252089 |||||| || ||||| || || |||||| | || || | || || | Sbjct 134901 CTTCTTGGTCACACACGGGATGGTCTCAATTGCACGCAGCAGGTGGTCCTTTTCCACAGC 134960 Query 252090 GTCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAA 252149 ||||| |||| || |||| || || ||||||| ||| || |||||| || || Sbjct 134961 GTCCTTGATGTACGTGTCAATGAGCAGCGAGTACACCTCTGAGTGGATGTTCTCAATGGC 135020 Query 252150 CATCTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGTT 252209 |||||| | | ||||| ||| || ||| | ||||| || |||||| | Sbjct 135021 AATCTGGAAGCCGTAGAAGCAACGAGCCTCAGGCACTTGTACTTCATTGCTAAAGTTCAT 135080 Query 252210 TGCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAA-GCCAAGAATGGTCTTGA 252268 || | |||||| |||| |||||||| ||| | |||||||| |||||| | | ||||| Sbjct 135081 GGCCAAGTTCTCGTTCACGATGCCATCACTGGCGGCAAAGAAGGCCAAG-ACGTGCTTGA 135139 Query 252269 TGAAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAG 252328 ||||||||||||| | ||| |||| || | |||||| | ||| || || Sbjct 135140 TGAAGTGACGCTCGTTGTCTGTGAG---GTTTCCCCAGTCCTTGAGGTCGTGTACCAAGT 135196 Query 252329 GAACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACAT-TGCGAACACATCA 252387 | |||||| | |||||||| ||| | |||||||||||||||| ||| |||| || Sbjct 135197 CCAGCTCTTCCGCAGTCCAGAAGCTGGCCTCCGCCTTCTTGTACATCTGC-CACACGTCG 135255 Query 252388 GGGTACTTGATTGGGAA-AGCA 252408 | | || ||| ||||| |||| Sbjct 135256 TGCTCCTGGATGGGGAACAGCA 135277 >seq2096 Length=20288 Score = 170 bits (188), Expect = 4e-37 Identities = 659/1020 (65%), Gaps = 33/1020 (3%) Strand=Plus/Minus Query 279350 GGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAACTCTAC 279409 ||| || || ||||||| ||||||||||| || ||||| | ||||||||| ||| | Sbjct 15528 GGACCTTTGCAACTGTGAGTTCTCGCTCGCTTACGGTGGTATGATTCTGCTGAACAACGC 15469 Query 279410 CCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCGGGTAA 279469 ||| || | | ||||||||| |||| || ||||| ||||||||| || ||||| Sbjct 15468 CCGTCTTCGCCTGAAGCGTGGCCACCGTTACGGTCTGTGCGGTCCCAACGGTTGCGGTAA 15409 Query 279470 GAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCC-TAACGCATCTG 279528 | || || |||||||| ||| | ||||| ||||| || || || || | ||| | | Sbjct 15408 GTCTACGCTTATGCGCGCTATTTCCAACGGCCAGCTTGACGGCTTCCCGTCGCGCGAC-G 15350 Query 279529 AGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCCTCTCTCTCGGATAGCACTGTGT 279588 || | | ||| |||| || |||||| || | | | || | || |||| Sbjct 15349 AGCTGAAGACTGTGTTCGTCGAGCACAACTTGCAGGCTTCGGAGGCCGAGCTGTCTGTTG 15290 Query 279589 TCGACTTCCTAACGTCTGACAATCAGGTTATGGAAATCAGCTCTCCTGAGGAAATCATCC 279648 | |||||| | || || | | | | ||| | | ||| || |||| || | Sbjct 15289 TGGACTTCATCCTGTTCGATGAGGACCTGAAGGACA-CTCCTCGCC--AGGAGGTCGTTG 15233 Query 279649 AGAAACTGGAGGCCAATGGTTTTGATGAAAGA-ATGCGTAATCTGCCAGTAGGTTCTCTG 279707 | | || | | ||| || | || |||| | | | || || | || Sbjct 15232 ACACGCTTACCGGCG-TGGACTTCACCGCTGAGATGCAAGCCCAGGCTGTGGGCACCCTT 15174 Query 279708 TCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGATGTC 279767 |||||||||||||||||||| |||| || | || || || || | | ||||| | Sbjct 15173 TCGGGTGGTTGGAAGATGAAACTGGAGCTGGCCCGTGCTATGCTTCAGAAGGCCGACATT 15114 Query 279768 CTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGTGTCC 279827 || || ||||||||||| || |||||| |||| || ||||| || ||||| | | | Sbjct 15113 CTGCTTCTTGATGAGCCGACGAACCACTTGGATGTCAAGAACGTTGCGTGGCTCGAGAAC 15054 Query 279828 TACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTTCCTA 279887 ||||| || | ||| ||| || | | |||| || || |||||||| ||||||| Sbjct 15053 TACCTGACGAACCTGCCGAACGTGACGAGCATCATGGTGTCCCACGACTCCAGCTTCCTT 14994 Query 279888 GATGCCGTGTGCTCTGCCATCATTCACTATGAG---CAAAATCTGAAGCTCTCCAAGCAC 279944 || | || || | |||||||||||| ||| | || |||||| ||| |||| Sbjct 14993 GACACGGTCTGTACGAACATCATTCACTACGAGACCCGTAAGCTGAAGATCTACAAG--- 14937 Query 279945 ATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCCTACTATGACCTG 280004 |||||||| || ||||||| | |||||||| |||||||| || ||| Sbjct 14936 ---GGCAACCTTTCCAAGTTCGTGGAGGTGAAGCCTGAGGCCAAGGCCTACTACGAGCTG 14880 Query 280005 AAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAGGGCATC-ACATC 280063 ||| || ||| || || ||||| ||||| || || || | | |||| | | | Sbjct 14879 GAGGCTGCTACCTTCAGGTTCACGTTCCCGGAGCCTGGTTTCCTTGCTGACATCAAGAAC 14820 Query 280064 AAAGGATCGCGCAATCATGAAGCTCCGTGGCGTCTCCTTTGCTTATC---CCAATGGCCC 280120 || || || | |||| | ||| | || | | || | | ||||| Sbjct 14819 AAGGGTAAGC-CCATCA------TTCGTCTGACCAACTGTACCTACCAGTACCCTGGCCG 14767 Query 280121 CAAC--ATCTTC-AGCAGTGTCAACTCG--CAGGT-TTCTATGAACTCACGGATTGGTGT 280174 || | | || | || || ||| | || || || || || |||| || Sbjct 14766 TGACAAACCGTCGATCAACAACATTTCGGTGACGTGCGCTCTGTCATCGCGTATTGCCGT 14707 Query 280175 CATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCA 280234 |||| ||||| ||||| |||||||| || || ||||| | ||||| || ||| | Sbjct 14706 GCTTGGCCCCAACGGTGCCGGTAAGTCGACGCTGATCAAGATGCTGACGGGTGAGGTTGA 14647 Query 280235 GGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCA 280294 |||| || | || |||||||| || |||||| | ||||||||||||||||| Sbjct 14646 ACCCACCATCGGTACGGTATGGAAGCACCCTTCCATGCGTTTCGCTTACGTCGCTCAGCA 14587 Query 280295 CGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCG 280354 ||||||||| ||||| || | ||||| ||| |||| | ||| ||||| |||||||| Sbjct 14586 CGCTTTCCATCACATTGAAGAGCACCTCGACGAGACTGCCAACGCCTACATCCAGTGGCG 14527 >seq1704 Length=6733 Score = 102 bits (112), Expect = 2e-16 Identities = 62/66 (94%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 2039 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAG 1980 Query 142563 CCCCAC 142568 |||||| Sbjct 1979 CCCCAC 1974 >seq1577 Length=1772 Score = 84.2 bits (92), Expect = 4e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 142505 CCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCC 142564 |||| ||||||||||||||||||||| | || |||| | |||||||||||||||||||| Sbjct 233 CCCGTCTAGCTCAGTCGGTAGAGCGCTGGCCTTTTAAGCCAGTGGTCGTGGGTTCGAGCC 292 Query 142565 CCAC 142568 |||| Sbjct 293 CCAC 296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027799531280030