Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712645.1_202016-08- 24] 2,830 sequences; 37,002,228 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq2145 210 4e-49 seq2096 170 4e-37 seq1234 134 3e-26 seq2557 125 1e-23 seq1001 114 2e-20 seq1704 95.1 2e-14 >seq2145 Length=220927 Score = 210 bits (232), Expect = 4e-49 Identities = 618/936 (66%), Gaps = 25/936 (3%) Strand=Plus/Plus Query 9893 TTAGAAGTCTGCGTCAATTGCAAACACGTTGTCGTCGGCATTCATG---ACGCCCGCCTT 9949 ||| ||||| ||||||| || ||||| | || ||||| | ||||| ||||| Sbjct 134349 TTAAAAGTCGGCGTCAAGTGTGAACACCTGCTCTTCGGCCGCAACACCCACGCCTGCCTT 134408 Query 9950 CTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTCGAGGGAAATGAGCTC 10009 |||||| || || |||||||||||||| |||||||| || || || | || Sbjct 134409 GGAGTACTCGCCCACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGTAGAGAGATCATGTC 134468 Query 10010 CATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACCGAGTGCTGTGAAAAT 10069 ||| ||||||| ||||||| | || | ||||| ||| || | | | Sbjct 134469 CATCCAGTCAAACGGGTTCTTGACGTTGTAGATCTTGGACACACCAAGCGAATACAGCAG 134528 Query 10070 GCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTTCATGCCAATCATGCG 10129 |||||| ||||||||||| |||||||||| ||| || ||||||||||||| |||| || Sbjct 134529 GCGGTCTGCCACGAACTCAATGTACTGGCACATGAGCGCCGAGTTCATGCCGATCA-GCT 134587 Query 10130 GCAG-GGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGCTTCCTCGACGATGC 10188 || |||| | ||||| | ||| || | |||| | || || || || || | Sbjct 134588 CCACTGGGAGCGAGTCGCTCACGAACTCGTGTTCGATCTTCACAGCGTCACGGATAAT-C 134646 Query 10189 TCTTTACCACG-TCAAGGGACAGCTTGTTCTCGAGCTTCGAATACAGGAGCTCTCCAAAC 10247 || | |||| | | ||||||| || | |||||||| |||| || |||| Sbjct 134647 TCGTGCACACGCTGCTCCGGCAGCTTGGTCACCAGCTTCGAGTACAACAGACAAGCAAAG 134706 Query 10248 TGCTG-GTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAAACCCAGACCGGGCAT 10306 | ||| ||| | || || || || ||||||| ||||||||| || | |||||| ||||| Sbjct 134707 T-CTGTGTGCATACCTTCATCACGACTGATGAGCTCGTTGGAGAAGCTCAGACCAGGCAT 134765 Query 10307 GAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGGAGAACAGAAGA--CCC 10364 ||| || || || |||||||| |||| ||| || || || ||||| ||||| ||| Sbjct 134766 GAGACCACGCTTCTTGAGCCAGAAGATGGAGCAAAAGGAGCCCGAGAA--GAAGATTCCC 134823 Query 10365 TCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGGAG----CGGTCGCG-CGAAAAGT 10419 ||||| | | || | || ||||| | | | ||| | ||| | || | Sbjct 134824 TCCACAGCTGCGAATGCCAGAAGACGCTCCGGGTATGAGGACACTTTCGGGTCGCACC-- 134881 Query 10420 ATTTCGAGGCCCACGCTGCCTTCTTTCCCACGGCAGGGATCGTCTCGATAGCCTCGAAG- 10478 || || ||||| |||||||| ||| ||||| ||||| || || || || Sbjct 134882 ATCTCAGCGCCCAACTCGCCTTCTTGGTCACACACGGGATGGTCTCAATTGCA-CGCAGC 134940 Query 10479 AGCTTGTTACGCTCGGTCTCGTCCTCAATAAGAGCATCAAGGAGCAGGGAGTATTGCTCG 10538 || | || || |||||| || | |||| |||||| ||||| ||| Sbjct 134941 AGGTGGTCCTTTTCCACAGCGTCCTTGATGTACGTGTCAATGAGCAGCGAGTACACCTCT 135000 Query 10539 CTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAACATACGTGCCGAGGGGTCCGTG 10598 ||||| | ||||| || |||| | ||||||| ||| ||| || | Sbjct 135001 GAGTGGATGTTCTCAATGGCAATCTGGAAGCCGTAGAAGCAACGAGCCTCAGGCACTTGT 135060 Query 10599 ACTTCCTCGGCAAAGTTGTTGTTCAGGTTCTCCATCACCATGCCATCGCTGCCTGCAAAG 10658 ||||| | | |||||| || || |||||| |||| |||||||| ||| | |||||| Sbjct 135061 ACTTCATTGCTAAAGTTCATGGCCAAGTTCTCGTTCACGATGCCATCACTGGCGGCAAAG 135120 Query 10659 AAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATCGTTCAGTTTTTCACGCCAGTCT 10718 ||| | | || ||||||||||||||| ||||| | || | || ||| | |||||| Sbjct 135121 AAGGCCAAGACGTGCTTGATGAAGTGACGCTCGTTGTCTGTGAGGTTT---CCCCAGTCC 135177 Query 10719 ACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCAGAAAGTGGCAACGGCCTTCTTG 10778 | || || | | | ||| ||| | |||||||| |||| | ||||||||| Sbjct 135178 TTGAGGTCGTGTACCAAGTCCAGCTCTTCCGCAGTCCAGAAGCTGGCCTCCGCCTTCTTG 135237 Query 10779 TACATCTGGAAAATGTCGGGGTACCGGATGGGGAAC 10814 |||||||| | | |||| | | | ||||||||||| Sbjct 135238 TACATCTGCCACACGTCGTGCTCCTGGATGGGGAAC 135273 >seq2096 Length=20288 Score = 170 bits (188), Expect = 4e-37 Identities = 441/664 (66%), Gaps = 16/664 (2%) Strand=Plus/Plus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 |||||||||||||| ||||| ||| ||| ||||| | ||||| || |||||||| Sbjct 14527 CGCCACTGGATGTAGGCGTTGGCAGTCTCGTCGAGGTGCTCTTCAATGTGATGGAAAGCG 14586 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTCGGT 225100 ||||| || ||||| || | |||||| || |||||||| || | || || ||| Sbjct 14587 TGCTGAGCGACGTAAGCGAAACGCATGGAAGGGTGCTTCCATACCGTACCGATGGTGGGT 14646 Query 225101 TGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAATC 225160 | |||| || || || | |||||| ||||| | ||| || ||||| |||||||||| | Sbjct 14647 TCAACCTCACCCGTCAGCATCTTGATCAGCGTCGACTTACCGGCACCGTTGGGGCCAAGC 14706 Query 225161 ACGCCAATCCGGGATGACATTGC-AAC--CTGCGAGTTCACGTTGCT-GAAG--ATCTCA 225214 ||| |||| || ||||||| || || | ||| | |||| | || | | ||| Sbjct 14707 ACGGCAATACGCGATGACAGAGCGCACGTCACCGAAATGTTGTTGATCGACGGTTTGTCA 14766 Query 225215 GGGCCAGTTTGGTAAGCAAAGGCCACGCCACGCAGCTTCATGATGGCACGGTCCTTGGAA 225274 |||||| |||| ||| | ||| ||||||| ||||| Sbjct 14767 CGGCCAG---GGTACTGGTAGGTACAGTTGGTCAGACGAATGATGGGCTTACCCTTGTTC 14823 Query 225275 GTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTCCTTCAGG 225334 | || | | ||||| || ||||| |||||| || || || ||| ||| Sbjct 14824 TTGATGTCAGCAAGGAAACCAGGCTCCGGGAACGTGAACCTGAAGGTAGCAGCCTCCAGC 14883 Query 225335 TCGTAGTAAGATGCAGCCTCGGG--TCGCTTTGCCACGAAAGCAGACAGGTTTCCGAGGT 225392 |||||||| | ||||| || || | | ||||||| || ||||| || || Sbjct 14884 TCGTAGTAGGCCTTGGCCTCAGGCTTCACCT--CCACGAACTTGGAAAGGTTGCCCTTGT 14941 Query 225393 GCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAATTGCCGAGCACACTGCGTCAAGGA 225452 || | ||||| || ||||||| |||| || || || || | |||||||| Sbjct 14942 AGATCTTCAGCTTACGG---GTCTCGTAGTGAATGATGTTCGTACAGACCGTGTCAAGGA 14998 Query 225453 AGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAGGTGCGTGA 225512 ||| |||||||||||||| |||||| || |||||||| |||| | | |||| | Sbjct 14999 AGCTGGAGTCGTGGGACACCATGATGCTCGTCACGTTCGGCAGGTTCGTCAGGTAGTTCT 15058 Query 225513 TGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGGATGT 225572 |||||| || ||||| |||| |||| |||||| || || || || |||||||| |||| Sbjct 15059 CGAGCCACGCAACGTTCTTGACATCCAAGTGGTTCGTCGGCTCATCAAGAAGCAGAATGT 15118 Query 225573 CAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGACAGGG 225632 | || | || || || || | || ||| ||||| ||||| || || || |||| Sbjct 15119 CGGCCTTCTGAAGCATAGCACGGGCCAGCTCCAGTTTCATCTTCCAACCACCCGAAAGGG 15178 Query 225633 AGCC 225636 ||| Sbjct 15179 TGCC 15182 Score = 113 bits (124), Expect = 8e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 224449 GTGAGAAATAACTACTACACCGCCGCCGAATGACTCAAGGGCGGATGAAAGCGCGCCAAG 224508 ||||| ||| | || ||||| ||| ||| || | || | | ||| || ||||| Sbjct 13983 GTGAGTAATCATAACGACACCACCGTTGAACTCCTTGATAGCCGTAGCAAGGGCACCAAG 14042 Query 224509 CGACTCGCGGTCAAGGAAGTTCGTCGGCTCATCCAGGATGATAACGTGGGGGCACTGCCA 224568 || |||||||||||| ||||||| |||||||| || | | | ||| ||| | |||| Sbjct 14043 AGAGTCGCGGTCAAGGTAGTTCGTGGGCTCATCAAGCACCAGGATGTGCGGGTTCAGCCA 14102 Query 224569 CAGGGCTGCACCAACCACCAGCTTCACCTTCTGACCGCCAGAGAGGCCGCGGATCCGCGA 224628 || ||| ||||| | ||| | ||||||||||||||| || || || || || || ||||| Sbjct 14103 CATGGCAGCACCCAGCACGACCTTCACCTTCTGACCACCGGACAGACCACGCATGCGCGA 14162 Query 224629 GTGAGTCGTGAATTCGG 224645 ||| || ||| |||| Sbjct 14163 GTGCGTACCGAACTCGG 14179 >seq1234 Length=43497 Score = 134 bits (148), Expect = 3e-26 Identities = 390/591 (66%), Gaps = 12/591 (2%) Strand=Plus/Minus Query 268209 CCCCAGTTGCAATCACAAAGTCCTCTGGCTCAGGAGACTGGAGCATTTTCCACATTGCTT 268268 |||| ||||| | ||||| || ||||| | || | |||| |||||| | Sbjct 7454 CCCCCGTTGCTACAACAAAATCTTCTGGTGTATCGTGTTGCAACATTCGCCACATGCACT 7395 Query 268269 CGACATAGTCCCGCGCATGGCCCCAATCGCGCTTTGCGTCCATGTTCCCGAGGAACAGGC 268328 | |||||||| || ||||| ||||| ||||| || || | || || | || || | Sbjct 7394 CAACATAGTCGCGGGCATGACCCCAGTCGCGTCGAGCATCTAAATTGCCCACAAAAAGAC 7335 Query 268329 ATTTCTGCTTGCCGAGCTTCACGCGTGCAAGACCGCGAGTGATTTTTCGGGTCACGAACG 268388 | |||| ||| | ||| | | | | || |||| || | || | ||| | Sbjct 7334 ACTTCTCGAGTCCGGCACGGATGCGCACCACAGCACGCGTGACCTTCCTAGTGATGAAAG 7275 Query 268389 TCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAGGATGCCGTTGCAC-GCGAACATGCCA 268447 || ||||| | || |||||||||||||| ||||| ||||| ||| |||||||| || Sbjct 7274 TCGGTCCACGCCGCGGACTCTCGTGGTTGAACAGGATTCCGTT-CACAGCGAACATTCCG 7216 Query 268448 TATGCCTCACGGTAGTTCACGACCGTCCAGTATGCAAACATCTTTGCAACTGCGTACGGA 268507 || || || |||| || || || |||| | ||||| ||| |||| | ||||| Sbjct 7215 TAAGCTTCGCGGTGATTTACCACACTCCAAAAGGCAAATTGCTTCGCAATGCCATACGGC 7156 Query 268508 GAACGTGGATGGAAGGGCG--TCGTGATCTTTTGAGGGATTTCTCGGACTTTGCCAAAGA 268565 || ||||| ||||| |||| || | ||| || || | |||| || || || | | Sbjct 7155 GAGCGTGGGTGGAATGGCGTATCTTCATC--CTGCGGCGTGGCTCGTACCTTCCCGTACA 7098 Query 268566 GCTCGGAGGTCGATGCTTGGTAGAACTTTGTTGTTTTTTCGAGACCGCAGATTCGGATTG 268625 || || || || ||||||||| | || || ||| || ||||| | || | | Sbjct 7097 ATTCACTTGTGGAGGCCTGGTAGAACCTAGTGGTACGTTCAAGCCCGCAAGTGCG--TAG 7040 Query 268626 CCTCG--AGCAAACGAAGAGTTCCCATGCCATCCACGTCCGCTGTATACTCCGGCATCTC 268683 |||| |||| || | |||| | ||||| || || || ||||| | || || Sbjct 7039 ACTCGTAAGCAGCCGCAACACACCCAAAGCGTCCACATCGGCCGTGTACTCGGCCAGTTC 6980 Query 268684 GAATGACACCTGGACATGGCTCTGGGCGCCCAGGTTATAAACCTCATCCGGTTTGACCTG 268743 |||||||| | |||||| | || |||||||| || |||||||||||| || | Sbjct 6979 AAATGACACTTTCACATGGGACATTGCACCCAGGTTGTACACCTCATCCGGTCGCACTTT 6920 Query 268744 CTGCACGATCT-TCACGAGGTTCGTTGAGTCGGTGAGGTCTCCGTAGTGCA 268793 | ||| |||| ||| | || | | |||||||||||||||||||||| Sbjct 6919 CGCCACAATCTGGCAC-ATATTGGACGCATCGGTGAGGTCTCCGTAGTGCA 6870 >seq2557 Length=41672 Score = 125 bits (138), Expect = 1e-23 Identities = 168/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 68228 TTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATA 68287 ||||||||| || ||||| || | |||| ||| || || ||||| || |||||||| || Sbjct 9782 TTAATTTCCGCCACGAAGACGAAGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTA 9841 Query 68288 ATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTC 68347 ||| || || | || || || | |||||| |||||||| || || | || ||||| Sbjct 9842 GTCGCTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTC 9901 Query 68348 GGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGA 68407 || || ||||||||||||||||| || || ||| || ||||| | ||| | | Sbjct 9902 AGGCGGGATGCCTTCCTTGTCTTGGATTTTCTGCTTCACATTGTCGATCGAGTCGGAAGG 9961 Query 68408 TTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || | ||||| || || || || || ||||| || || |||||||| Sbjct 9962 CTCCACGTCGAGCGTGATAGTCTTGCCAGTCAGTGTCTTCACAAAGATCTGCAT 10015 Score = 113 bits (124), Expect = 8e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | |||| ||| || || ||||| || |||||||| || ||| Sbjct 14102 CCACCACGCAGGCGAAGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTC 14043 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || || | || ||||| || || Sbjct 14042 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 13983 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||||||||||||||| || || ||| || ||||| | ||| | | || || Sbjct 13982 ATGCCTTCCTTGTCTTGGATTTTCTGCTTCACATTGTCGATTGAGTCGGAAGGCTCCACG 13923 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||| || || || || || ||||| || || |||||||| Sbjct 13922 TCGAGCGTGATAGTCTTGCCAGTCAGTGTCTTCACAAAGATCTGCAT 13876 Score = 113 bits (124), Expect = 8e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 68232 TTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCG 68291 || || || ||||| || | |||| ||| || || ||||| || |||||||| || ||| Sbjct 14333 TTACCGCCACGAAGACGAAGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCG 14274 Query 68292 GAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGT 68351 || || | || || || | |||||| |||||||| || || | || ||||| || Sbjct 14273 CTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGC 14214 Query 68352 GGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCT 68411 || ||||||||||||||||| || || ||| || ||||| | ||| | | || Sbjct 14213 GGGATGCCTTCCTTGTCTTGGATTTTCTGCTTCACATTGTCGATCGAGTCGGAAGGCTCC 14154 Query 68412 ACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || | ||||| || || || || || ||||| || || |||||||| Sbjct 14153 ACGTCGAGCGTGATAGTCTTGCCAGTCAGTGTCTTCACAAAGATCTGCAT 14104 >seq1001 Length=7348 Score = 114 bits (126), Expect = 2e-20 Identities = 99/123 (80%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 224501 GCGCCAAGCGACTCGCGGTCAAGGAAGTTCGTCGGCTCATCCAGGATGATAACGTGGGGG 224560 ||||| |||| ||||||| ||| | ||||||||||||||||| | | | ||| ||| Sbjct 3772 GCGCCCAGCGCAGCGCGGTCCAGGTAATTCGTCGGCTCATCCAGCACCAGCAAGTGCGGG 3713 Query 224561 CACTGCCACAGGGCTGCACCAACCACCAGCTTCACCTTCTGACCGCCAGAGAGGCCGCGG 224620 || | ||||| ||| ||| ||| ||| ||||||||||||||||| || ||||| |||||| Sbjct 3712 CAGTTCCACATGGCAGCAGCAATCACAAGCTTCACCTTCTGACCACCCGAGAGACCGCGG 3653 Query 224621 ATC 224623 ||| Sbjct 3652 ATC 3650 >seq1704 Length=6733 Score = 95.1 bits (104), Expect = 2e-14 Identities = 60/65 (92%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||| |||||||||||| |||||||||| ||||||| ||||||||||||||||||||| Sbjct 2038 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGC 1979 Query 84516 CCCAC 84520 ||||| Sbjct 1978 CCCAC 1974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921589797607600